YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120828, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120828, gi|....

Description	E-value	Query Range	Subject Range
NAPF_HAEIN - Ferredoxin-type protein napF homolog OS=Haemophilus influenzae GN=napF PE=4 SV=2 NAPF_HAEIN - Ferredoxin-type protein NapF homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20...	99.0	[0..5]	[161..17]
gi\|48868877, gi\|... - gi\|68248947\|ref\|YP_248059.1\| ferredoxin-type protein NapF [Haemophilus influenzae 86-028NP], gi\|6805... gi\|145272342, gi... - gi\|145638747\|ref\|ZP_01794356.1\| quinol dehydrogenase periplasmic component [Haemophilus influenzae P... gi\|53733213 - gi\|53733213\|ref\|ZP_00349665.1\| COG1145: Ferredoxin [Haemophilus influenzae R2866]	99.0	[0..5]	[161..17]
gi\|71849231, gi\|... - gi\|71909610\|ref\|YP_287197.1\| periplasmic nitrate reductase maturation protein NapF [Dechloromonas ar...	99.0	[0..1]	[155..1]
gi\|145268205, gi... - gi\|145634660\|ref\|ZP_01790369.1\| quinol dehydrogenase periplasmic component [Haemophilus influenzae P... gi\|42629804 - gi\|42629804\|ref\|ZP_00155349.1\| COG1145: Ferredoxin [Haemophilus influenzae R2846]	98.0	[0..5]	[161..17]
gi\|75818869, gi\|... - gi\|75818869\|ref\|ZP_00748985.1\| COG1145: Ferredoxin [Vibrio cholerae V51], gi\|116219939\|ref\|ZP_014853...	98.0	[0..1]	[158..1]
gi\|75824131, gi\|... - gi\|75824131\|ref\|ZP_00753596.1\| COG1145: Ferredoxin [Vibrio cholerae RC385], gi\|116217342\|ref\|ZP_0148...	98.0	[0..1]	[158..1]
gi\|75211624, gi\|... - gi\|75211624\|ref\|ZP_00711703.1\| COG1145: Ferredoxin [Escherichia coli B171], gi\|194427246\|ref\|ZP_0305...	98.0	[0..2]	[156..3]
gi\|192931961, gi... - gi\|75259680\|ref\|ZP_00730982.1\| COG1145: Ferredoxin [Escherichia coli E22], gi\|193062295\|ref\|ZP_03043...	98.0	[0..2]	[156..3]
gi\|229516460, gi... - gi\|229516460\|ref\|ZP_04405907.1\| nitrate reductase [Vibrio cholerae RC9], gi\|229346341\|gb\|EEO11312.1\|... gi\|229506163, gi... - gi\|229506163\|ref\|ZP_04395672.1\| nitrate reductase [Vibrio cholerae BX 330286], gi\|229356514\|gb\|EEO21... gi\|227812243, gi... - gi\|227812243\|ref\|YP_002812253.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae M66-2], g... gi\|254285698, gi... - gi\|254285698\|ref\|ZP_04960661.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae AM-19226],... gi\|153824474, gi... - gi\|153824474\|ref\|ZP_01977141.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae MZO-2], gi... gi\|229605702, gi... - gi\|229605702\|ref\|YP_002876406.1\| nitrate reductase [Vibrio cholerae MJ-1236], gi\|229372188\|gb\|ACQ626... gi\|146314509, gi... - gi\|227119811\|ref\|YP_002821706.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae O395], gi... gi\|229334859, gi... - gi\|229528497\|ref\|ZP_04417888.1\| nitrate reductase [Vibrio cholerae 12129(1)], gi\|229334859\|gb\|EEO003... gi\|121725810, gi... - gi\|121725810\|ref\|ZP_01679110.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae V52], gi\|1... gi\|254845540, gi... - gi\|254849835\|ref\|ZP_05239185.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae MO10], gi\|... gi\|153800855, gi... - gi\|153800855\|ref\|ZP_01955441.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae MZO-3], gi... gi\|126521707, gi... - gi\|229509979\|ref\|ZP_04399459.1\| nitrate reductase [Vibrio cholerae B33], gi\|229352424\|gb\|EEO17364.1\|... gi\|126511377, gi... - gi\|153818109\|ref\|ZP_01970776.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae NCTC 8457]... gi\|15601433, gi\|... - gi\|9658093\|gb\|AAF96576.1\| iron-sulfur cluster-binding protein NapF [Vibrio cholerae O1 biovar eltor ... gi\|11355611 - pir\|\|B82430 iron-sulfur cluster-binding protein NapF VCA0676 [imported] - Vibrio cholerae (strain N1...	97.0	[0..1]	[158..5]
gi\|153219900, gi... - gi\|153219900\|ref\|ZP_01951469.1\| ferredoxin-type protein NapF [Vibrio cholerae MAK 757], gi\|124120460... gi\|121585584, gi... - gi\|121585584\|ref\|ZP_01675380.1\| ferredoxin-type protein NapF [Vibrio cholerae 2740-80], gi\|121550201... tr\|A0A085TCJ1\|A0... - Ferredoxin-type protein NapF OS=Vibrio cholerae GN=napF PE=4 SV=1 gi\|116190372, gi... - gi\|75831685\|ref\|ZP_00760946.1\| COG1145: Ferredoxin [Vibrio cholerae MO10], gi\|116190372\|ref\|ZP_01480... gi\|75817113 - gi\|75817113\|ref\|ZP_00747567.1\| COG1145: Ferredoxin [Vibrio cholerae V52] gi\|75825491 - gi\|75825491\|ref\|ZP_00754927.1\| COG1145: Ferredoxin [Vibrio cholerae O395]	97.0	[0..1]	[158..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLSRRSLL TGGLQRADNA LRPPWSGDES HFLSQCSRCN ACVEACETRI IQRGSGGFPT  60
   61 IDFQRGECTF CYDCARACPQ ALFAESHTAP WEYHLTIQDA CLSLHQVECR SCQDACETGA 120
  121 IRFRPTLGRI AAPSIDDDAC TTCGACISGC PVGAMSMKKI TAGYHTAPAR LTTQQENR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	2.30396363257976	bayes_pls_golite062009
nitrate reductase activity	1.53091169847324	bayes_pls_golite062009
catalytic activity	0.858923918006343	bayes_pls_golite062009
oxidoreductase activity	0.100797464100664	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: