YRC Public Data Repository - Protein Structure Prediction

Protein:	Y2529_PECAS
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2529_PECAS.

Description	E-value	Query Range	Subject Range
gi\|21959124, gi\|... - gi\|22126161\|ref\|NP_669584.1\| putative hydrolase [Yersinia pestis KIM], gi\|21959124\|gb\|AAM85835.1\|AE0...	209.0	[0..1]	[245..38]
gi\|166207676, gi... - gi\|166210496\|ref\|ZP_02236531.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. B42003... gi\|167401369, gi... - gi\|167401369\|ref\|ZP_02306866.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|45441683, gi\|... - gi\|45441683\|ref\|NP_993222.1\| putative hydrolase [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|166961860, gi... - gi\|167420165\|ref\|ZP_02311918.1\| putative phosphoesterase [Yersinia pestis biovar Orientalis str. MG0... gi\|229898094, gi... - gi\|229898094\|ref\|ZP_04513243.1\| predicted zinc-binding hydrolase [Yersinia pestis biovar Orientalis ... Y2037_YERPE - Probable phosphatase YPO2037/y2275/YP_1880 OS=Yersinia pestis GN=YPO2037 PE=3 SV=1 gi\|167056295, gi... - gi\|167424413\|ref\|ZP_02316166.1\| putative phosphoesterase [Yersinia pestis biovar Mediaevalis str. K1... gi\|229897447, gi... - gi\|229897447\|ref\|ZP_04512603.1\| predicted zinc-binding hydrolase [Yersinia pestis biovar Orientalis ... gi\|16122276, gi\|... - gi\|218929144\|ref\|YP_002347019.1\| putative hydrolase [Yersinia pestis CO92], gi\|16122276\|ref\|NP_40558... Y2165_YERPY - Probable phosphatase YPK_2165 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2165... gi\|229894743, gi... - gi\|229894743\|ref\|ZP_04509923.1\| predicted zinc-binding hydrolase [Yersinia pestis Pestoides A], gi\|2... Y2019_YERPS - Probable phosphatase YPTB2019 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2019... Y2077_YERPB - Probable phosphatase YPTS_2077 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_207... gi\|165921605, gi... - gi\|165926384\|ref\|ZP_02222216.1\| putative phosphoesterase [Yersinia pestis biovar Orientalis str. F19... gi\|166009251, gi... - gi\|166009251\|ref\|ZP_02230149.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. E19790... Y2053_YERP3 - Probable phosphatase YpsIP31758_2053 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) ... Y2019_YERPS - Probable phosphatase YPTB2019 OS=Yersinia pseudotuberculosis GN=YPTB2019 PE=3 SV=1 Y1419_YERPA - Probable phosphatase YPA_1419 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_1419 PE=3 SV=1 gi\|149366034, gi... - gi\|149366034\|ref\|ZP_01888069.1\| putative hydrolase [Yersinia pestis CA88-4125], gi\|149292447\|gb\|EDM4... Y1514_YERPN - Probable phosphatase YPN_1514 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1514 PE=3 SV=1 Y1086_YERPP - Probable phosphatase YPDSF_1086 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1086 PE=3 SV=1 gi\|89104305, gi\|... - gi\|89104305\|ref\|ZP_01176852.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	205.0	[0..1]	[245..1]
gi\|238715871, gi... - gi\|77959370\|ref\|ZP_00823390.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	204.0	[0..1]	[245..1]
Y2446_YERPG - Probable phosphatase YpAngola_A2446 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A2446...	204.0	[0..1]	[245..1]
EG13870 - alkaline phosphatase / Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY YCDX_ECOLI - Putative hydrolase ycdX (EC 3.1.-.-) - Escherichia coli YCDX_ECOBW - Probable phosphatase YcdX OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ycdX PE=3 SV=1 gi\|89107879, gi\|... - gi\|89107879\|ref\|AP_001659.1\| predicted zinc-binding hydrolase [Escherichia coli str. K-12 substr. W3... YCDX_ECODH - Probable phosphatase YcdX OS=Escherichia coli (strain K12 / DH10B) GN=ycdX PE=3 SV=1 EG13870 - alkaline phosphatase / Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY	204.0	[0..1]	[245..1]
gi\|238728195, gi... - gi\|77979768\|ref\|ZP_00835184.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	203.0	[0..1]	[245..1]
gi\|238797838, gi... - gi\|77959912\|ref\|ZP_00823832.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	203.0	[0..1]	[245..1]
gi\|77973508, gi\|... - gi\|77973508\|ref\|ZP_00829055.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	201.0	[0..1]	[245..1]
gi\|213646860 - gi\|213646860\|ref\|ZP_03376913.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... gi\|214002386 - gi\|214002386\|ref\|ZP_03413121.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... YCDX_SALPC - Probable phosphatase YcdX OS=Salmonella paratyphi C (strain RKS4594) GN=ycdX PE=3 SV=1 YCDX_SALTY - Putative hydrolase ycdX OS=Salmonella typhimurium GN=ycdX PE=3 SV=1 YCDX_SALPA - Probable phosphatase YcdX OS=Salmonella paratyphi A GN=ycdX PE=3 SV=1 YCDX_SALTI - Putative hydrolase ycdX OS=Salmonella typhi GN=ycdX PE=3 SV=1 YCDX_SALCH - Putative hydrolase ycdX OS=Salmonella choleraesuis GN=ycdX PE=3 SV=1 gi\|16760013 - gi\|16760013\|ref\|NP_455630.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typhi s... YCDX_SALTY - Probable phosphatase YcdX OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ycdX PE... gi\|29142216, gi\|... - gi\|29142216\|ref\|NP_805558.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typhi s... YCDX_SALPB - Putative hydrolase ycdX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ycdX PE=3 SV=1 YCDX_SALCH - Probable phosphatase YcdX OS=Salmonella choleraesuis (strain SC-B67) GN=ycdX PE=3 SV=1 YCDX_SALPA - Probable phosphatase YcdX OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ycdX PE=3 SV=1 gi\|213162407 - gi\|213162407\|ref\|ZP_03348117.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... gi\|213417540 - gi\|213417540\|ref\|ZP_03350682.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... gi\|213427743 - gi\|213427743\|ref\|ZP_03360493.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... YCDX_SALPB - Probable phosphatase YcdX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ycdX PE=3 SV=1 gi\|213581804 - gi\|213581804\|ref\|ZP_03363630.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... YCDX_SALPK - Probable phosphatase YcdX OS=Salmonella paratyphi A (strain AKU_12601) GN=ycdX PE=3 SV=1 YCDX_SALTY - Probable phosphatase YcdX OS=Salmonella typhimurium GN=ycdX PE=3 SV=1 YCDX_SALDC - Probable phosphatase YcdX OS=Salmonella dublin (strain CT_02021853) GN=ycdX PE=3 SV=1 YCDX_SALCH - Probable phosphatase YcdX OS=Salmonella choleraesuis GN=ycdX PE=3 SV=1 gi\|200390492, gi... - gi\|200390492\|ref\|ZP_03217103.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Virc... YCDX_SALEP - Probable phosphatase YcdX OS=Salmonella enteritidis PT4 (strain P125109) GN=ycdX PE=3 SV=1 YCDX_SALNS - Probable phosphatase YcdX OS=Salmonella newport (strain SL254) GN=ycdX PE=3 SV=1 gi\|194469683, gi... - gi\|194469683\|ref\|ZP_03075667.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Kent... YCDX_SALA4 - Probable phosphatase YcdX OS=Salmonella agona (strain SL483) GN=ycdX PE=3 SV=1 gi\|197263823, gi... - gi\|197263823\|ref\|ZP_03163897.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Sain... gi\|205322436, gi... - gi\|205322436\|gb\|EDZ10275.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Saintpau... YCDX_SALTI - Probable phosphatase YcdX OS=Salmonella typhi GN=ycdX PE=3 SV=1 gi\|205328027, gi... - gi\|205328027\|gb\|EDZ14791.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar 4,[5],12... lcl\|NC_016856.1_... - [gene=ycdX] [protein=putative hydrolase] [protein_id=YP_005236884.1] [location=1184250..1184987] gi\|205331923, gi... - gi\|205331923\|gb\|EDZ18687.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Kentucky... gi\|205347350, gi... - gi\|205347350\|gb\|EDZ33981.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Hadar st...	199.0	[0..1]	[245..1]
YCDX_SHIDS - Probable phosphatase YcdX OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ycdX PE=3 SV=1	198.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPVDLHMHT VASTHAYSTL HDYIVEAQQK NIRLFAITDH GPDMADAPHY WHFMNMRVWP  60
   61 RLVDGVGILR GIEANIKNIE GDIDCTGPML DQVDVIIAGF HEPVFPPQDK DTHTAAMIAT 120
  121 MARGDAHIIS HPGNPKFPVD IRAIAEAAAK YNVALELNNS SFIHSRQGSE PNCRAIAEAV 180
  181 RDAGGLLSLG SDSHIAFSLG DFTHCERILQ EVNFPQDRIL NVSPRRVLDF LEQRGMPAIA 240
  241 ELADL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits