YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49612555, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49612555, gi|....

Description	E-value	Query Range	Subject Range
GSPG_ERWCA - (P31586) General secretion pathway protein G precursor (Pectic enzymes secretion protein outG) GSPG_PECCC - Type II secretion system protein G OS=Pectobacterium carotovorum subsp. carotovorum GN=outG PE=3 SV=...	184.0	[0..9]	[146..19]
gi\|126639839, gi... - gi\|78366001\|ref\|ZP_00836284.1\| General secretion pathway protein G [Shewanella sp. PV-4], gi\|7836190...	176.0	[0..4]	[144..1]
gi\|34499266, gi\|... - gi\|34499266\|ref\|NP_903481.1\| general secretion pathway protein G [Chromobacterium violaceum ATCC 124...	176.0	[0..1]	[145..1]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	175.0	[0..8]	[143..14]
gi\|117918612, gi... - gi\|78685479\|ref\|ZP_00850257.1\| General secretion pathway protein G [Shewanella sp. ANA-3], gi\|785068...	175.0	[0..4]	[144..1]
gi\|68541301, gi\|... - gi\|68541301\|ref\|ZP_00581046.1\| General secretion pathway protein G [Shewanella baltica OS155], gi\|68...	175.0	[0..4]	[144..1]
gi\|124508691, gi... - gi\|124548115\|ref\|ZP_01706881.1\| general secretion pathway protein G [Shewanella putrefaciens 200], g... gi\|120600490, gi... - gi\|82741859\|ref\|ZP_00904570.1\| General secretion pathway protein G [Shewanella sp. W3-18-1], gi\|8272...	175.0	[0..4]	[144..1]
gi\|160858804, gi... - gi\|160873282\|ref\|YP_001552598.1\| general secretion pathway protein G [Shewanella baltica OS195], gi\|... gi\|217496504, gi... - gi\|217971369\|ref\|YP_002356120.1\| general secretion pathway protein G [Shewanella baltica OS223], gi\|...	175.0	[0..4]	[144..1]
gi\|77811490, gi\|... - gi\|77813399\|ref\|ZP_00812674.1\| General secretion pathway protein G [Shewanella putrefaciens CN-32], ...	174.0	[0..4]	[144..1]
GSPG_AERHY - Type II secretion system protein G OS=Aeromonas hydrophila GN=exeG PE=3 SV=1	174.0	[0..7]	[143..3]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQRQRGYSQ RGFTLLEIMV VIVILGVLAS LVVPNLMGNK EKADKQKAVS DIVSLESALD  60
   61 MYKLDNNRYP STEQGLKALV TKPTVQPEPR NYPADGYIRR LPQDPWGTDY QLLNPGQHGK 120
  121 LDIFSLGPDG MPGTEDDIGN WNLDKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits