YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50122642, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50122642, gi|....

Description	E-value	Query Range	Subject Range
gi\|85058815, gi\|... - gi\|85058815\|ref\|YP_454517.1\| hypothetical protein SG0837 [Sodalis glossinidius str. 'morsitans'], gi...	394.0	[0..1]	[272..1]
gi\|213610158 - gi\|213610158\|ref\|ZP_03369984.1\| hypothetical protein SentesTyp_06444 [Salmonella enterica subsp. ent... gi\|16760411 - gi\|16760411\|ref\|NP_456028.1\| hypothetical protein STY1617 [Salmonella enterica subsp. enterica serov... gi\|25512711, gi\|... - gi\|25512711\|pir\|\|AF0686 hypothetical protein STY1617 [imported] - Salmonella enterica subsp. enteric... gi\|29137453, gi\|... - gi\|29141825\|ref\|NP_805167.1\| hypothetical protein t1371 [Salmonella enterica subsp. enterica serovar... gi\|213648563 - gi\|213648563\|ref\|ZP_03378616.1\| hypothetical protein SentesTy_15524 [Salmonella enterica subsp. ente... gi\|213855900 - gi\|213855900\|ref\|ZP_03384140.1\| hypothetical protein SentesT_18445 [Salmonella enterica subsp. enter...	394.0	[0..1]	[272..1]
gi\|75255743, gi\|... - gi\|75255743\|ref\|ZP_00727504.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	393.0	[0..1]	[272..1]
gi\|75228564, gi\|... - gi\|75228564\|ref\|ZP_00715198.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	393.0	[0..1]	[272..1]
gi\|188488965, gi... - gi\|75512141\|ref\|ZP_00734713.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	388.0	[0..1]	[272..1]
gi\|48696940, gi\|... - gi\|48696940\|ref\|YP_024703.1\| gp30 [Burkholderia phage BcepMu], gi\|44829503\|gb\|AAS47870.1\| gp30 [Burk... gi\|197295369, gi... - gi\|197295369\|ref\|YP_002153910.1\| phage Mu F virion morphogenesis protein [Burkholderia cenocepacia J...	388.0	[0..1]	[272..1]
gi\|37527314, gi\|... - gi\|37527314\|ref\|NP_930658.1\| hypothetical protein plu3440 [Photorhabdus luminescens subsp. laumondii...	379.0	[0..8]	[271..1]
gi\|34103449, gi\|... - gi\|34497593\|ref\|NP_901808.1\| hypothetical protein CV_2138 [Chromobacterium violaceum ATCC 12472], gi...	370.0	[0..6]	[273..4]
gi\|57904721 - gi\|57904721\|gb\|AAW58966.1\| gp30 [Cloning vector MuNXKan] GPF_BPMU - Putative capsid assembly protein F OS=Enterobacteria phage Mu GN=F PE=2 SV=2	341.0	[0..1]	[272..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITATELAY CMTLPPKRAI SYLQAKGYVI SWDWEEVWQE SHTRAFTVAK VTRLDILEDI  60
   61 RRALQQSLDE GLTDHWFRKE LEPVLQKKGW WGPRDTTDPV TGEPVTIQQG SPWRLDTIFR 120
  121 TNMSVLYSAG RWAAQMENVD DRPYWMYSAI RDKHTRQSHL SMHGLVFRFD DPFWQAFYPP 180
  181 NGWRCRCSVI ALSQHDIERR G

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.677781
Match:	PF04233.5
Description:	No description for PF04233.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [202-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKVANAINSM GWELKLVSEK TSEMQRVATF NTGSTKISTD LGWSYAPGAA YRPDLARYQG  60
   61 GLTSLAKQEL SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.752	N/A	N/A	b.40.6	MOP-like
View	Download	0.689	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.644	N/A	N/A	d.15.1	Ubiquitin-like
View	Download	0.581	N/A	N/A	c.55.7	Methylated DNA-protein cysteine methyltransferase domain
View	Download	0.580	N/A	N/A	d.14.1	Ribosomal protein S5 domain 2-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits