YRC Public Data Repository - Protein Structure Prediction

Protein:	BAME_VIBCH
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAME_VIBCH.

Description	E-value	Query Range	Subject Range
BAME_VIBF1 - Outer membrane protein assembly factor BamE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=bamE ...	158.0	[0..1]	[118..1]
gi\|121726019, gi... - gi\|121726019\|ref\|ZP_01679318.1\| small protein A [Vibrio cholerae V52], gi\|121631501\|gb\|EAX63871.1\| s... gi\|121550052, gi... - gi\|121585689\|ref\|ZP_01675484.1\| small protein A [Vibrio cholerae 2740-80], gi\|121550052\|gb\|EAX60068.... gi\|153818051, gi... - gi\|153818051\|ref\|ZP_01970718.1\| small protein A [Vibrio cholerae NCTC 8457], gi\|126511397\|gb\|EAZ7399... gi\|124117549, gi... - gi\|153224620\|ref\|ZP_01954527.1\| small protein A [Vibrio cholerae MAK 757], gi\|124117549\|gb\|EAY36292.... gi\|153822049, gi... - gi\|229510790\|ref\|ZP_04400269.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|146315440, gi... - gi\|227117221\|ref\|YP_002819117.1\| small protein A [Vibrio cholerae O395], gi\|227012671\|gb\|ACP08881.1\|... gi\|11356167 - gi\|11356167\|pir\|\|F82272 small protein A VC0851 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|229505539, gi... - gi\|229505539\|ref\|ZP_04395049.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|227008915, gi... - gi\|227081027\|ref\|YP_002809578.1\| small protein A [Vibrio cholerae M66-2], gi\|227008915\|gb\|ACP05127.1... gi\|229344626, gi... - gi\|229517911\|ref\|ZP_04407355.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229349938, gi... - gi\|229513045\|ref\|ZP_04402511.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229339055, gi... - gi\|229525474\|ref\|ZP_04414879.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229339707, gi... - gi\|229523344\|ref\|ZP_04412751.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|254847988, gi... - gi\|254847988\|ref\|ZP_05237338.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254843693\|... gi\|9655303, gi\|1... - gi\|9655303\|gb\|AAF94013.1\| small protein A [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564086... gi\|229608559, gi... - gi\|229608559\|ref\|YP_002879207.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane p...	154.0	[0..1]	[119..18]
gi\|84387680, gi\|... - gi\|84387680\|ref\|ZP_00990697.1\| Small protein A [Vibrio splendidus 12B01], gi\|84377525\|gb\|EAP94391.1\|... gi\|148980257, gi... - gi\|148980257\|ref\|ZP_01815965.1\| Small protein A [Vibrionales bacterium SWAT-3], gi\|145961351\|gb\|EDK2...	154.0	[0..1]	[118..1]
gi\|27359954, gi\|... - gi\|27363837\|ref\|NP_759365.1\| small protein A [Vibrio vulnificus CMCP6], gi\|27359954\|gb\|AAO08892.1\|AE...	154.0	[0..1]	[118..1]
gi\|37679005, gi\|... - gi\|37679005\|ref\|NP_933614.1\| small protein A [Vibrio vulnificus YJ016], gi\|37197747\|dbj\|BAC93585.1\| ...	153.0	[0..1]	[118..1]
gi\|86145629, gi\|... - gi\|86145629\|ref\|ZP_01063959.1\| Small protein A [Vibrio sp. MED222], gi\|85836600\|gb\|EAQ54726.1\| Small...	153.0	[0..1]	[118..1]
gi\|75857319, gi\|... - gi\|75857319\|ref\|ZP_00764935.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio sp. Ex25], gi\|116186...	152.0	[0..1]	[118..1]
gi\|28897421, gi\|... - gi\|28897421\|ref\|NP_797026.1\| small protein A [Vibrio parahaemolyticus RIMD 2210633], gi\|28805633\|dbj... gi\|28805633 - gi\|28805633\|dbj\|BAC58910.1\| small protein A [Vibrio parahaemolyticus RIMD 2210633] gi\|153837727, gi... - gi\|153837727\|ref\|ZP_01990394.1\| small protein A [Vibrio parahaemolyticus AQ3810], gi\|149748922\|gb\|ED...	151.0	[0..1]	[118..1]
gi\|91225102, gi\|... - gi\|91225102\|ref\|ZP_01260324.1\| small protein A [Vibrio alginolyticus 12G01], gi\|91190045\|gb\|EAS76316...	150.0	[0..1]	[118..1]
gi\|74276050, gi\|... - gi\|75434661\|ref\|ZP_00733238.1\| small protein A (tmRNA-binding) [Actinobacillus succinogenes 130Z], g...	147.0	[0..2]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFTKWFIAL PLAVTALSGC SLLERLVYRI DINQGNYVDQ QSVDQLKFGM SKDQVRFVLG  60
   61 SPMLVENGYP DTWYYIYHHT QGHNDPVQKN LIVKFNDGGK LVNVAGDFPA GDSFFEGVN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.0
Match:	PF04355.4
Description:	No description for PF04355.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits