YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51459816, gi\|...
Organism:	Rickettsia typhi str. Wilmington
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51459816, gi|....

Description	E-value	Query Range	Subject Range
gi\|7444163, gi\|3... - pir\|\|H71686 tolQ protein (tolQ) RP309 - Rickettsia prowazekii, gi\|3860870\|emb\|CAA14770.1\| TOLQ PROTE... gi\|15604178 - gi\|15604178\|ref\|NP_220693.1\| TOLQ protein (tolQ) [Rickettsia prowazekii str. Madrid E]	215.0	[0..1]	[241..1]
gi\|157799509, gi... - gi\|52698727\|ref\|ZP_00340135.1\| COG0811: Biopolymer transport proteins [Rickettsia akari str. Hartfor...	214.0	[0..1]	[241..1]
gi\|91068624, gi\|... - gi\|91205080\|ref\|YP_537435.1\| hypothetical protein RBE_0265 [Rickettsia bellii RML369-C], gi\|91068624... gi\|109729046, gi... - gi\|157827583\|ref\|YP_001496647.1\| hypothetical protein A1I_06470 [Rickettsia bellii OSU 85-389], gi\|1...	201.0	[0..1]	[241..1]
gi\|25520839 - pir\|\|F98270 tolQ protein [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gi\|15159594, gi\|... - gi\|15891231\|ref\|NP_356903.1\| hypothetical protein AGR_L_2236 [Agrobacterium tumefaciens str. C58], g...	200.0	[0..13]	[239..53]
gi\|15619491, gi\|... - gi\|15892345\|ref\|NP_360059.1\| tolQ protein [Rickettsia conorii str. Malish 7], gi\|15619491\|gb\|AAL0296... gi\|25301384 - pir\|\|F97752 tolQ protein [imported] - Rickettsia conorii (strain Malish 7) gi\|28262033, gi\|... - gi\|34580648\|ref\|ZP_00142128.1\| tolQ protein [Rickettsia sibirica 246], gi\|28262033\|gb\|EAA25537.1\| to... gi\|167471546, gi... - gi\|229586571\|ref\|YP_002845072.1\| TolQ [Rickettsia africae ESF-5], gi\|228021621\|gb\|ACP53329.1\| TolQ [...	200.0	[0..1]	[241..1]
gi\|13235464, gi\|... - gi\|42453558\|ref\|ZP_00153465.1\| COG0811: Biopolymer transport proteins [Rickettsia rickettsii], gi\|13... gi\|157828297, gi... - gi\|157828297\|ref\|YP_001494539.1\| tolQ protein [Rickettsia rickettsii str. 'Sheila Smith'], gi\|157800... gi\|165933001, gi... - gi\|165933001\|ref\|YP_001649790.1\| hypothetical protein RrIowa_0504 [Rickettsia rickettsii str. Iowa],...	200.0	[0..1]	[241..1]
gi\|67004429, gi\|... - gi\|67458896\|ref\|YP_246520.1\| TolQ protein [Rickettsia felis URRWXCal2], gi\|67004429\|gb\|AAY61355.1\| T...	198.0	[0..6]	[241..7]
gi\|71849286, gi\|... - gi\|71909665\|ref\|YP_287252.1\| MotA/TolQ/ExbB proton channel [Dechloromonas aromatica RCB], gi\|7184928...	198.0	[0..13]	[235..1]
gi\|13235473 - gi\|13235473\|emb\|CAC33632.1\| TolQ protein [Rickettsia montanensis]	197.0	[0..1]	[241..1]
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	197.0	[0..17]	[235..33]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADTNINDR LEIVMQDHFS ILSLIGSSDF IGKSVMLMLL IASIWSWSII LHKIFSLAQV  60
   61 QRRIQSFENV FWSGCVLEQL YESIKKSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNPLALIFVS AMDECNSLNT KGFSEALKNN HKERIMSAMY LAQNREIEKL EKYLNVLATV  60
   61 GSSAPFVGLF GTVWGIMHSF QSIALSKNTS LAVVAPGIAE ALLATAIGLF VAIPAVIFYN 120
  121 YLMSRITLIN NKIEDFISEL NSILSKAIDQ EKM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.49485
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits