YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14521785, gi\|...
Organism:	Pyrococcus abyssi GE5
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14521785, gi|....

Description	E-value	Query Range	Subject Range
gi\|20093930, gi\|... - gi\|20093930\|ref\|NP_613777.1\| fused ProFAR isomerase-like protein/uncharacterized protein [Methanopyr...	159.0	[0..1]	[108..234]
gi\|51975460, gi\|... - gi\|52141991\|ref\|YP_084839.1\| hypothetical protein BCZK3253 [Bacillus cereus E33L], gi\|51975460\|gb\|AA...	143.0	[0..3]	[108..2]
gi\|57160096, gi\|... - gi\|57641772\|ref\|YP_184250.1\| hypothetical protein TK1837 [Thermococcus kodakarensis KOD1], gi\|571600...	142.0	[0..1]	[109..1]
gi\|42782608, gi\|... - gi\|42782608\|ref\|NP_979855.1\| hypothetical protein BCE_3558 [Bacillus cereus ATCC 10987], gi\|42738534...	140.0	[0..3]	[108..2]
gi\|58177464 - gi\|58177464\|pdb\|1XNE\|A Chain A, Solution Structure Of Pyrococcus Furiosus Protein Pf0470: The Northe... gi\|18892443, gi\|... - gi\|18976842\|ref\|NP_578199.1\| hypothetical protein PF0470 [Pyrococcus furiosus DSM 3638], gi\|18892443...	140.0	[0..1]	[113..1]
gi\|74490225, gi\|... - gi\|75762286\|ref\|ZP_00742170.1\| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israel...	139.0	[0..3]	[108..5]
gi\|3256850, gi\|1... - gi\|3256850\|dbj\|BAA29533.1\| 114aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590361\|... gi\|7518651 - pir\|\|H71155 hypothetical protein PH0447 - Pyrococcus horikoshii	138.0	[0..1]	[113..2]
gi\|32189307, gi\|... - gi\|6017115\|gb\|AAF01598.1\|AC009895_19 unknown protein [Arabidopsis thaliana], gi\|32189307\|gb\|AAP75808...	137.0	[0..4]	[105..107]
gi\|47568902, gi\|... - gi\|47568902\|ref\|ZP_00239594.1\| hypothetical protein cytosolic protein [Bacillus cereus G9241], gi\|47...	136.0	[0..3]	[108..2]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVYRLYLRD EYLEMVKSGK KKIEVRVAYP QLRGIKKGDK IIFNDMIPAE VIDVKRYETF  60
   61 RQVLREEPIE KIFPDEPSFE RALRRFHNMY PKWKEYRYGV IAIKFRILGR ERK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1xneA
Description:	Solution Structure of Pyrococcus furiosus Protein PF0470: The Northeast Structural Genomics Consortium Target PfR14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits