YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7518597, gi\|1...
Organism:	Pyrococcus horikoshii
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7518597, gi|1....

Description	E-value	Query Range	Subject Range
gi\|20093930, gi\|... - gi\|20093930\|ref\|NP_613777.1\| fused ProFAR isomerase-like protein/uncharacterized protein [Methanopyr...	152.0	[0..2]	[108..236]
gi\|51975460, gi\|... - gi\|52141991\|ref\|YP_084839.1\| hypothetical protein BCZK3253 [Bacillus cereus E33L], gi\|51975460\|gb\|AA...	142.0	[0..1]	[109..1]
gi\|42782608, gi\|... - gi\|42782608\|ref\|NP_979855.1\| hypothetical protein BCE_3558 [Bacillus cereus ATCC 10987], gi\|42738534...	141.0	[0..1]	[109..1]
gi\|7518025, gi\|5... - pir\|\|G75009 hypothetical protein PAB1060 - Pyrococcus abyssi (strain Orsay), gi\|5459031\|emb\|CAB50517... gi\|5459031, gi\|1... - gi\|5459031\|emb\|CAB50517.1\| Hypothetical protein [Pyrococcus abyssi GE5], gi\|14521811\|ref\|NP_127287.1...	140.0	[0..1]	[109..1]
gi\|74490225, gi\|... - gi\|75762286\|ref\|ZP_00742170.1\| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israel...	139.0	[0..1]	[109..4]
gi\|58176694 - gi\|58176694\|pdb\|1S04\|A Chain A, Solution Structure Of The Hypothetical Protein Pf0455 From Pyrococcu... gi\|18892426, gi\|... - gi\|18976827\|ref\|NP_578184.1\| hypothetical protein PF0455 [Pyrococcus furiosus DSM 3638], gi\|18892426...	138.0	[0..1]	[109..1]
gi\|30263492, gi\|... - gi\|30263492\|ref\|NP_845869.1\| hypothetical protein BA3599 [Bacillus anthracis str. Ames], gi\|30258127... gi\|21401466 - ref\|NP_657451.1\| hypothetical protein BA_4091 [Bacillus anthracis str. A2012] gi\|49331028, gi\|... - gi\|49479472\|ref\|YP_037625.1\| hypothetical protein BT9727_3303 [Bacillus thuringiensis serovar konkuk... gi\|49180270, gi\|... - gi\|49186343\|ref\|YP_029595.1\| hypothetical protein BAS3338 [Bacillus anthracis str. Sterne], gi\|49180... gi\|47504033, gi\|... - gi\|47528885\|ref\|YP_020234.1\| hypothetical protein GBAA3599 [Bacillus anthracis str. 'Ames Ancestor']... gi\|195993171, gi... - gi\|196034097\|ref\|ZP_03101507.1\| conserved hypothetical protein [Bacillus cereus W], gi\|195993171\|gb\|... gi\|227813629, gi... - gi\|227813629\|ref\|YP_002813638.1\| hypothetical protein BAMEG_1033 [Bacillus anthracis str. CDC 684], ... gi\|218904669, gi... - gi\|218904669\|ref\|YP_002452503.1\| hypothetical protein BCAH820_3553 [Bacillus cereus AH820], gi\|21853... gi\|172082123, gi... - gi\|177652449\|ref\|ZP_02934916.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|190564379, gi... - gi\|190565062\|ref\|ZP_03017983.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|167640555, gi... - gi\|167640555\|ref\|ZP_02398817.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|254744859 - gi\|254744859\|ref\|ZP_05202537.1\| hypothetical protein BantKB_28310 [Bacillus anthracis str. Kruger B] gi\|170708137, gi... - gi\|170708137\|ref\|ZP_02898584.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|254738582 - gi\|254738582\|ref\|ZP_05196285.1\| hypothetical protein BantWNA_25754 [Bacillus anthracis str. Western ... gi\|164713277, gi... - gi\|165871066\|ref\|ZP_02215717.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|254723509 - gi\|254723509\|ref\|ZP_05185297.1\| hypothetical protein BantA1_13669 [Bacillus anthracis str. A1055] gi\|167636285, gi... - gi\|167636285\|ref\|ZP_02394587.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|229603452, gi... - gi\|229603452\|ref\|YP_002867738.1\| hypothetical protein BAA_3628 [Bacillus anthracis str. A0248], gi\|2... gi\|254759172 - gi\|254759172\|ref\|ZP_05211198.1\| hypothetical protein BantA9_12771 [Bacillus anthracis str. Australia... gi\|254752900 - gi\|254752900\|ref\|ZP_05204936.1\| hypothetical protein BantV_10531 [Bacillus anthracis str. Vollum]	136.0	[0..1]	[109..1]
gi\|47568902, gi\|... - gi\|47568902\|ref\|ZP_00239594.1\| hypothetical protein cytosolic protein [Bacillus cereus G9241], gi\|47...	135.0	[0..1]	[109..1]
gi\|171988895, gi... - gi\|68054929\|ref\|ZP_00539078.1\| ProFAR isomerase-like [Exiguobacterium sibiricum 255-15], gi\|68008447...	135.0	[0..1]	[109..1]
gi\|32189307, gi\|... - gi\|6017115\|gb\|AAF01598.1\|AC009895_19 unknown protein [Arabidopsis thaliana], gi\|32189307\|gb\|AAP75808...	135.0	[0..1]	[105..105]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWEMGLQEE YIELIKAGKK KIEGRLYDEK RRQIKPGDII IFEGGKLKVK VKGIRVYSSF  60
   61 KEMLEKEGIE NVLPGVKSIE EGVKVYRQFY DEEREKKYGV VAIEIEPIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1s04A
Description:	Solution Structure Of The Hypothetical Protein PF0455 From Pyrococcus furiosus: Northeast Structural Genomics Consortium Target PfR13
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits