YRC Public Data Repository - Protein Structure Prediction

Protein:	PFPI_PYRHO
Organism:	Pyrococcus horikoshii OT3
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFPI_PYRHO.

Description	E-value	Query Range	Subject Range
gi\|19916492, gi\|... - gi\|20091359\|ref\|NP_617434.1\| intracellular protease I [Methanosarcina acetivorans C2A], gi\|19916492\|...	168.0	[0..1]	[166..1]
gi\|20807466, gi\|... - gi\|20807466\|ref\|NP_622637.1\| putative intracellular protease/amidase [Thermoanaerobacter tengcongens... gi\|20807466 - gi\|20807466\|ref\|NP_622637.1\| putative intracellular protease/amidase [Thermoanaerobacter tengcongens...	165.0	[0..2]	[166..3]
gi\|255114788, gi... - gi\|255253661\|ref\|ZP_05333232.1\| intracellular protease, PfpI family [Thermoanaerobacter italicus Ab9... gi\|166854258, gi... - gi\|167040018\|ref\|YP_001663003.1\| PfpI family intracellular peptidase [Thermoanaerobacter sp. X514], ... gi\|242257006, gi... - gi\|242257006\|ref\|ZP_04801884.1\| intracellular protease, PfpI family [Thermoanaerobacter sp. X513], g...	165.0	[0..2]	[166..3]
gi\|76796858, gi\|... - gi\|76796858\|ref\|ZP_00779208.1\| Peptidase C56, PfpI [Thermoanaerobacter ethanolicus ATCC 33223], gi\|7... gi\|241904491, gi... - gi\|241904491\|ref\|ZP_04789183.1\| intracellular protease, PfpI family [Thermoanaerobacter brockii subs...	164.0	[0..2]	[166..3]
PFPI_PYRFU - Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1 PFPI_PYRFU - Intracellular protease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=p...	164.0	[0..1]	[166..1]
PFPI_PYRAB - Intracellular protease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pfpI PE=3 SV=1 PFPI_PYRAB - Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1	163.0	[0..1]	[166..1]
gi\|83950854, gi\|... - gi\|83950854\|ref\|ZP_00959587.1\| proteinase [Roseovarius nubinhibens ISM], gi\|83838753\|gb\|EAP78049.1\| ...	163.0	[0..2]	[166..8]
gi\|48845922, gi\|... - gi\|78223612\|ref\|YP_385359.1\| peptidase C56, PfpI [Geobacter metallireducens GS-15], gi\|78194867\|gb\|A...	162.0	[0..1]	[166..1]
gi\|113941739, gi... - gi\|159897361\|ref\|YP_001543608.1\| PfpI family intracellular peptidase [Herpetosiphon aurantiacus ATCC...	160.0	[0..2]	[165..9]
PFPI_THEKO - Intracellular protease 1 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pf... PFPI_PYRKO - Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1	160.0	[0..1]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLFLTANE FEDVELIYPY HRLKEEGHEV YIASFERGTI TGKHGYSVKV DLTFDKVNPE  60
   61 EFDALVLPGG RAPERVRLNE KAVSIARKMF SEGKPVASIC HGPQILISAG VLRGRKGTSY 120
  121 PGIKDDMINA GVEWVDAEVV VDGNWVSSRV PADLYAWMRE FVKLLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1g2iA
Description:	Intracellular protease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits