YRC Public Data Repository - Protein Structure Prediction

Protein:	APAG_PSEAE
Organism:	Pseudomonas aeruginosa PAO1
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APAG_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|49077734 - gi\|49077734\|gb\|AAT49712.1\| PA0591 [synthetic construct]	3.0E-56	[1..126]	[1..126]
APAG_PSEA7 - Protein ApaG OS=Pseudomonas aeruginosa (strain PA7) GN=apaG PE=3 SV=1	5.0E-56	[1..126]	[1..126]
APAG_DECAR - Protein ApaG OS=Dechloromonas aromatica (strain RCB) GN=apaG PE=3 SV=1	7.0E-56	[1..126]	[1..127]
gi\|213967676, gi... - gi\|213967676\|ref\|ZP_03395823.1\| apaG protein [Pseudomonas syringae pv. tomato T1], gi\|213927452\|gb\|E... APAG_PSESM - Protein ApaG OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=apaG PE=3 SV=1 APAG_PSESM - Protein apaG OS=Pseudomonas syringae pv. tomato GN=apaG PE=3 SV=1	1.0E-55	[1..126]	[1..126]
APAG_PSEF5 - Protein ApaG OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=apaG PE=3 SV=1	1.0E-55	[1..126]	[1..126]
gi\|67155362 - gi\|67155362\|ref\|ZP_00416990.1\| Protein of unknown function DUF525 [Azotobacter vinelandii AvOP] gi\|67155362, gi\|... - gi\|67155362\|ref\|ZP_00416990.1\| Protein of unknown function DUF525 [Azotobacter vinelandii AvOP], gi\|...	1.0E-55	[1..126]	[16..141]
gi\|23471530, gi\|... - gi\|66047855\|ref\|YP_237696.1\| ApaG [Pseudomonas syringae pv. syringae B728a], gi\|63258562\|gb\|AAY39658...	2.0E-55	[1..126]	[8..133]
tr\|I7C4I9\|I7C4I9... - Protein ApaG OS=Pseudomonas putida (strain DOT-T1E) GN=apaG PE=3 SV=1 tr\|E4RE34\|E4RE34... - Protein ApaG OS=Pseudomonas putida (strain BIRD-1) GN=apaG PE=3 SV=1 APAG_PSEP1 - Protein ApaG OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=apaG PE=3 SV=1 APAG_PSEPK - Protein ApaG OS=Pseudomonas putida (strain KT2440) GN=apaG PE=3 SV=1	2.0E-55	[1..126]	[1..126]
gi\|71557142, gi\|... - gi\|71736589\|ref\|YP_272931.1\| ApaG [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71557142\|gb\|AAZ3...	2.0E-55	[1..126]	[19..144]
APAG_PSEPF - Protein ApaG OS=Pseudomonas fluorescens (strain Pf0-1) GN=apaG PE=3 SV=1	8.0E-55	[1..126]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTQHQVNV RVDTRYLPEQ SAPEQNRFAF AYTVTIENQG EVPAQLLSRH WIITDGDGRT  60
   61 QEVRGAGVVG EQPLIAPGAQ HTYTSGTVLA TRVGSMRGSY QMLGSDGIAF DAAIPVFRLA 120
  121 VPGALH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1xvsA
Description:	Crystal structure of apaG Protein from Vibrio cholerae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits