YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11349092
Organism:	Pseudomonas aeruginosa
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11349092.

Description	E-value	Query Range	Subject Range
gi\|49078072 - gi\|49078072\|gb\|AAT49748.1\| PA1093 [synthetic construct]	132.0	[0..1]	[123..1]
gi\|53727488, gi\|... - gi\|53727488\|ref\|ZP_00138681.2\| COG1334: Uncharacterized flagellar protein FlaG [Pseudomonas aerugino... gi\|218773171, gi... - gi\|218892943\|ref\|YP_002441812.1\| hypothetical protein PLES_42281 [Pseudomonas aeruginosa LESB58], gi... gi\|194545214, gi... - gi\|254234229\|ref\|ZP_04927552.1\| hypothetical protein PACG_00064 [Pseudomonas aeruginosa C3719], gi\|1...	130.0	[0..1]	[123..1]
gi\|22778188, gi\|... - gi\|23099957\|ref\|NP_693423.1\| flagellar protein FlaG [Oceanobacillus iheyensis HTE831], gi\|22778188\|d...	112.0	[0..1]	[122..1]
gi\|109646090, gi... - gi\|68205548\|ref\|ZP_00557749.1\| Flagellar protein FlaG protein [Desulfitobacterium hafniense DCB-2], ...	111.0	[0..1]	[122..1]
gi\|63257401, gi\|... - gi\|66046694\|ref\|YP_236535.1\| flagellar protein FlaG protein [Pseudomonas syringae pv. syringae B728a...	111.0	[0..1]	[123..1]
tr\|Q884Y6\|Q884Y6... - Flagellin FlaG, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1950 PE=4 SV=1 gi\|28869154, gi\|... - gi\|28869154\|ref\|NP_791773.1\| flagellin FlaG, putative [Pseudomonas syringae pv. tomato str. DC3000],...	111.0	[0..1]	[123..3]
gi\|71736592, gi\|... - gi\|71736592\|ref\|YP_275549.1\| flagellin FlaG [Pseudomonas syringae pv. phaseolicola 1448A], gi\|715571... gi\|38175045 - gi\|38175045\|dbj\|BAD01156.1\| putative flagellin FlaG protein [Pseudomonas syringae pv. glycinea] gi\|49205104 - gi\|49205104\|dbj\|BAD24671.1\| FlaG [Pseudomonas syringae pv. tabaci]	107.0	[0..1]	[123..3]
gi\|196198361, gi... - gi\|196252228\|ref\|ZP_03150889.1\| flagellar protein FlaG protein [Clostridium thermocellum DSM 4150], ... gi\|125974704, gi... - gi\|67875289\|ref\|ZP_00504712.1\| Flagellar protein FlaG protein [Clostridium thermocellum ATCC 27405],...	105.0	[0..1]	[122..6]
gi\|107100543 - gi\|107100543\|ref\|ZP_01364461.1\| hypothetical protein PaerPA_01001568 [Pseudomonas aeruginosa PACS2] gi\|84328564, gi\|... - gi\|84328564\|ref\|ZP_00976568.1\| COG1334: Uncharacterized flagellar protein FlaG [Pseudomonas aerugino... gi\|2276417 - gi\|2276417\|gb\|AAC09390.1\| FlaG [Pseudomonas aeruginosa]	102.0	[0..1]	[123..1]
gi\|94415956, gi\|... - gi\|94415956\|ref\|ZP_01295788.1\| hypothetical protein PaerP_01002285 [Pseudomonas aeruginosa PA7], gi\|...	102.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVGNITSLS TFKTGRAPEA SGDIFAPRSA ADGSGKPLPE VTASREASES RDDLGLAVSD  60
   61 IQSFVQSVKR NLNFSIDDSS GQVVVKVIDG DSGEVVRQIP SEEVLKLAAR LDDVHSVLFE 120
  121 TRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits