YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351528
Organism:	Pseudomonas aeruginosa
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351528.

Description	E-value	Query Range	Subject Range
gi\|67532185, gi\|... - gi\|67546461\|ref\|ZP_00424374.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia vietnamiensis G4], gi\|6...	3.0E-71	[1..258]	[1..258]
gi\|84353845, gi\|... - gi\|84353845\|ref\|ZP_00978765.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	8.0E-70	[1..258]	[4..261]
gi\|67095578, gi\|... - gi\|67656861\|ref\|ZP_00454242.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia cenocepacia AU 1054], g... gi\|67665471, gi\|... - gi\|67665471\|ref\|ZP_00462734.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia cenocepacia HI2424], gi...	2.0E-69	[1..257]	[1..257]
gi\|67154018, gi\|... - gi\|67154018\|ref\|ZP_00415763.1\| NAD(P)H dehydrogenase (quinone) [Azotobacter vinelandii AvOP], gi\|670... gi\|67154018 - gi\|67154018\|ref\|ZP_00415763.1\| NAD(P)H dehydrogenase (quinone) [Azotobacter vinelandii AvOP]	3.0E-69	[1..257]	[1..257]
gi\|84358679 - gi\|84358679\|ref\|ZP_00983451.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	4.0E-69	[1..258]	[1..258]
gi\|78063179, gi\|... - gi\|78063179\|ref\|YP_373087.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia sp. 383], gi\|77971064\|gb\|...	6.0E-69	[1..258]	[1..258]
gi\|66047025, gi\|... - gi\|66047025\|ref\|YP_236866.1\| NAD(P)H dehydrogenase (quinone) [Pseudomonas syringae pv. syringae B728...	9.0E-69	[1..259]	[1..259]
gi\|84328696, gi\|... - gi\|84328696\|ref\|ZP_00976700.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|218773027, gi... - gi\|218892799\|ref\|YP_002441668.1\| putative NAD(P)H dehydrogenase [Pseudomonas aeruginosa LESB58], gi\|...	3.0E-68	[1..259]	[1..259]
gi\|76583453, gi\|... - gi\|76818980\|ref\|YP_336868.1\| quinone reductase [Burkholderia pseudomallei 1710b], gi\|76583453\|gb\|ABA...	3.0E-68	[1..258]	[33..290]
gi\|84322216, gi\|... - gi\|84322216\|ref\|ZP_00970561.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	4.0E-68	[1..259]	[1..259]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLIVYAHP EPRSLNGALK DFAVARLEAA GHAVQVSDLY AMGWKAVLDA GDSLEREASE  60
   61 RFDPSATSLR AFENGWQSVD IAGEQDKLRW ADTLILQFPL WWFSMPAILK GWIDRVYACG 120
  121 FAYGVGEHSD SHWGDRYGEG RMQGKRAMLV VTAGGWESHY AARGINGPMD DLLFPIHHGI 180
  181 LHYPGFEVLP PFVVYRSGRI DAERFAALSE QLGRRLDDLQ RAAPIPFRRQ NGGDYLIPAL 240
  241 TLRDELAPQR AGFAMHLAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1qrdA
Description:	NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.159285483239364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: