YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11349873
Organism:	Pseudomonas aeruginosa
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11349873.

Description	E-value	Query Range	Subject Range
gi\|49075638 - gi\|49075638\|gb\|AAT49485.1\| PA3338 [synthetic construct]	193.0	[0..1]	[96..1]
gi\|94413596, gi\|... - gi\|94413596\|ref\|ZP_01293475.1\| hypothetical protein PaerP_01004612 [Pseudomonas aeruginosa PA7], gi\|...	191.0	[0..1]	[96..1]
gi\|77381702, gi\|... - gi\|77457699\|ref\|YP_347204.1\| SelT/selW/selH selenoprotein [Pseudomonas fluorescens Pf0-1], gi\|773817...	188.0	[0..1]	[93..1]
gi\|24986246, gi\|... - gi\|26991198\|ref\|NP_746623.1\| hypothetical protein PP_4513 [Pseudomonas putida KT2440], gi\|24986246\|g...	187.0	[0..1]	[93..1]
gi\|95111902 - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent... gi\|104782915, gi... - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent...	186.0	[0..1]	[93..1]
gi\|67153923, gi\|... - gi\|67153923\|ref\|ZP_00415668.1\| Selenoprotein W-related [Azotobacter vinelandii AvOP], ref\|ZP_0009251... gi\|226720264, gi... - gi\|67153923\|ref\|ZP_00415668.1\| Selenoprotein W-related [Azotobacter vinelandii AvOP], gi\|67088056\|gb...	186.0	[0..1]	[94..1]
gi\|82713712, gi\|... - gi\|82739217\|ref\|ZP_00902028.1\| SelT/selW/selH selenoprotein [Pseudomonas putida F1], gi\|82713712\|gb\|...	185.0	[0..1]	[93..1]
gi\|17934144, gi\|... - gi\|17934144\|ref\|NP_530934.1\| hypothetical protein Atu0228 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25378705, gi\|... - pir\|\|AD2604 conserved hypothetical protein Atu0228 [imported] - Agrobacterium tumefaciens (strain C5...	183.0	[0..1]	[93..1]
gi\|66046825, gi\|... - gi\|66046825\|ref\|YP_236666.1\| selenoprotein W-related [Pseudomonas syringae pv. syringae B728a], gi\|6...	183.0	[0..1]	[93..1]
gi\|70728974, gi\|... - gi\|70728974\|ref\|YP_258708.1\| SelT/selW/selH domain-containing protein [Pseudomonas fluorescens Pf-5]...	182.0	[0..1]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTAKPEIVI TYCTQCQWLL RAAWLAQELL STFADDLGKV CLEPGTGGVF RITCDGVQVW  60
   61 ERKADGGFPE AKALKQRVRD RIDPQRDLGH NDRPSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2okaA
Description:	No description for 2okaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits