YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116051982, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116051982, gi....

Description	E-value	Query Range	Subject Range
gi\|66047520, gi\|... - gi\|66047520\|ref\|YP_237361.1\| Acyl-CoA thioesterase [Pseudomonas syringae pv. syringae B728a], gi\|632...	0.0	[1..289]	[1..289]
gi\|77385140, gi\|... - gi\|77461137\|ref\|YP_350644.1\| palmitoyl-CoA hydrolase [Pseudomonas fluorescens Pf0-1], gi\|77385140\|gb...	0.0	[1..289]	[1..289]
gi\|152986560, gi... - gi\|94412725\|ref\|ZP_01292630.1\| hypothetical protein PaerP_01005464 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..289]	[1..289]
gi\|71557703, gi\|... - gi\|71737150\|ref\|YP_276466.1\| acyl-CoA thioesterase II [Pseudomonas syringae pv. phaseolicola 1448A],...	0.0	[1..289]	[1..289]
gi\|37527715, gi\|... - gi\|37527715\|ref\|NP_931060.1\| acyl-CoA thioesterase II (TEII) [Photorhabdus luminescens subsp. laumon...	0.0	[1..285]	[1..285]
gi\|28871792, gi\|... - gi\|28871792\|ref\|NP_794411.1\| acyl-CoA thioesterase II [Pseudomonas syringae pv. tomato str. DC3000],... tr\|Q87W94\|Q87W94... - Acyl-CoA thioesterase II OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tesB PE=4 SV=1	0.0	[1..289]	[1..289]
gi\|25304482 - pir\|\|AC2915 acyl-CoA thioesterase II [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|17741270, gi\|... - gi\|17936631\|ref\|NP_533421.1\| acyl-CoA thioesterase II [Agrobacterium tumefaciens str. C58], gi\|17741...	0.0	[2..285]	[8..291]
gi\|148513896, gi... - gi\|82740096\|ref\|ZP_00902860.1\| Acyl-CoA thioesterase [Pseudomonas putida F1], gi\|82712834\|gb\|EAP4798... tr\|E4R6S4\|E4R6S4... - Acyl-CoA thioesterase II OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4516 PE=4 SV=1	0.0	[15..289]	[15..289]
gi\|119863628, gi... - gi\|119945024\|ref\|YP_942704.1\| acyl-CoA thioesterase II [Psychromonas ingrahamii 37], gi\|119863628\|gb...	0.0	[1..286]	[1..286]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQILDNLVA LLSLEPIEEN LFRGMSQDLG FRQLYGGQVL GQALSAASQT VEDDRHVHSM  60
   61 HGYFLRPGDA SMPVVYQVDR VRDGGSFSTR RVTAIQKGQP IFTLSSSFQY DEEGFHHQIE 120
  121 MPEVVGPDNL PSELELTRQR AERIPERIRD KLLYPKPIEI RPVTQHDPYD PQPDEPVKYL 180
  181 WFRADGKLPD VPALHKYLLA YASDFGFLTT SMQPHAVSVW QKTMQVASLD HALWFHRDLR 240
  241 ADEWLLYAID SPWAGNARGF VRGSIFNQSG QLVASSSQEG LIRKREDWA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.69897
Match:	1c8uA
Description:	Thioesterase II (TesB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl-CoA thioesterase activity	2.60197973503923	bayes_pls_golite062009
CoA hydrolase activity	2.3187640589669	bayes_pls_golite062009
thiolester hydrolase activity	1.14125301545576	bayes_pls_golite062009
catalytic activity	0.74605540351792	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	0.119939116817186	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: