YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9951258, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9951258, gi|1....

Description	E-value	Query Range	Subject Range
gi\|67532185, gi\|... - gi\|67546461\|ref\|ZP_00424374.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia vietnamiensis G4], gi\|6...	5.0E-57	[1..232]	[1..240]
gi\|78063179, gi\|... - gi\|78063179\|ref\|YP_373087.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia sp. 383], gi\|77971064\|gb\|...	2.0E-55	[1..232]	[1..240]
gi\|84353845, gi\|... - gi\|84353845\|ref\|ZP_00978765.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	2.0E-55	[1..232]	[4..243]
gi\|67154018, gi\|... - gi\|67154018\|ref\|ZP_00415763.1\| NAD(P)H dehydrogenase (quinone) [Azotobacter vinelandii AvOP], gi\|670... gi\|67154018 - gi\|67154018\|ref\|ZP_00415763.1\| NAD(P)H dehydrogenase (quinone) [Azotobacter vinelandii AvOP]	2.0E-55	[1..232]	[1..240]
gi\|115285527, gi... - gi\|74015088\|ref\|ZP_00685716.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia ambifaria AMMD], gi\|726...	3.0E-55	[1..232]	[1..240]
gi\|67095578, gi\|... - gi\|67656861\|ref\|ZP_00454242.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia cenocepacia AU 1054], g... gi\|67665471, gi\|... - gi\|67665471\|ref\|ZP_00462734.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia cenocepacia HI2424], gi...	3.0E-55	[1..232]	[1..240]
gi\|84322216, gi\|... - gi\|84322216\|ref\|ZP_00970561.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	8.0E-55	[1..232]	[1..240]
gi\|11351528 - pir\|\|G83491 probable NAD(P)H dehydrogenase PA1224 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|15596421, gi\|... - gi\|9947153\|gb\|AAG04613.1\|AE004552_3 probable NAD(P)H dehydrogenase [Pseudomonas aeruginosa PAO1], gi...	1.0E-54	[1..232]	[1..240]
gi\|66047025, gi\|... - gi\|66047025\|ref\|YP_236866.1\| NAD(P)H dehydrogenase (quinone) [Pseudomonas syringae pv. syringae B728...	1.0E-54	[1..232]	[1..240]
gi\|84328696, gi\|... - gi\|84328696\|ref\|ZP_00976700.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|218773027, gi... - gi\|218892799\|ref\|YP_002441668.1\| putative NAD(P)H dehydrogenase [Pseudomonas aeruginosa LESB58], gi\|...	1.0E-54	[1..232]	[1..240]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLIVHAHN EPQSFTRALC DQACETLAGQ GHAVQVSDLY AMNWNPVASA ADFAERADPD  60
   61 YLVYALEQRE SVKRQSLAAD IQAELDKLLW ADLLILNFPI YWFSVPAILK GWFDRVLVSG 120
  121 VCYGGKRFYD QGGLAGKKAL VSLTLGGRQH MFGEGAIHGP LEDMLRPILR GTLAYVGMQV 180
  181 LEPFVAWHVP YISEEARGNF LRAYRARLEN LEQDVPLRFP RLEQFDALLQ PLAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	1qrdA
Description:	NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.159285483239364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: