YRC Public Data Repository - Protein Structure Prediction

Protein:	PILQ_PSEAE
Organism:	Pseudomonas aeruginosa PAO1
Length:	714 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PILQ_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|194555063, gi... - gi\|84323873\|ref\|ZP_00971940.1\| COG4796: Type II secretory pathway, component HofQ [Pseudomonas aerug...	0.0	[1..714]	[1..714]
gi\|107104140 - gi\|107104140\|ref\|ZP_01368058.1\| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2]	0.0	[1..714]	[1..714]
gi\|94415411, gi\|... - gi\|94415411\|ref\|ZP_01295252.1\| hypothetical protein PaerP_01002779 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..714]	[1..714]
gi\|84317713, gi\|... - gi\|84317713\|ref\|ZP_00966151.1\| COG4796: Type II secretory pathway, component HofQ [Pseudomonas aerug...	0.0	[1..714]	[1..710]
gi\|115588409, gi... - gi\|53726586\|ref\|ZP_00141516.2\| COG4796: Type II secretory pathway, component HofQ [Pseudomonas aerug...	0.0	[1..714]	[1..710]
gi\|459551 - gi\|459551\|gb\|AAA16704.1\| fimbrial assembly protein [Pseudomonas aeruginosa] gi\|459551\|gb\|AAA... - fimbrial assembly protein	0.0	[1..714]	[14..727]
gi\|66043674, gi\|... - gi\|66043674\|ref\|YP_233515.1\| type II and III secretion system protein:NolW-like:NolW-like [Pseudomon...	0.0	[1..714]	[18..718]
gi\|71733370, gi\|... - gi\|71733370\|ref\|YP_272697.1\| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseol...	0.0	[1..714]	[1..701]
gi\|28872241, gi\|... - gi\|28872241\|ref\|NP_794860.1\| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato ... gi\|213925817, gi... - gi\|213969446\|ref\|ZP_03397583.1\| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. toma... tr\|Q87V13\|Q87V13... - Type IV pilus biogenesis protein PilQ OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilQ PE=...	0.0	[1..714]	[18..718]
gi\|77380640, gi\|... - gi\|77456637\|ref\|YP_346142.1\| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1...	0.0	[1..714]	[1..692]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSGLSRLGI ALLAAMFAPA LLAADLEKLD VAALPGDRVE LKLQFDEPVA APRGYTIEQP  60
   61 ARIALDLPGV QNKLGTKNRE LSVGNTRSVT VVEAKDRTRL IINLTALSSY TTRVEGNNLF 120
  121 VVVGNSPAGA SVASAAPVKA SPA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PASYAQPIKP KPYVPAGRAI RNIDFQRGEK GEGNVVIDLS DPTLSPDIQE QGGKIRLDFA  60
   61 KTQLPDALRV RLDVKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [220-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FATPVQFVNA SAQSDRTSIT IEPSGLYDYL VYQTDNRLTV SIKPMTTEDA ERRKKDNFAY  60
   61 TGEKLSLNFQ DIDVRSVLQL IADFTDLNLV ASDTVQGNIT LRLQNVPWDQ ALDLVLKTKG 120
  121 LDKRKLGNVL LVAPADEIAA RERQELEAQK QIAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [374-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAPLRRELIQ VNYAKAADIA KLFQSVTSDG GQEGKEGGRG SITVDDRTNS IIAYQPQERL  60
   61 DELRRIVSQL DIPVRQVMIE ARIVEAN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.657577
Match:	PF03958.8
Description:	No description for PF03958.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [461-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGYDKSLGVR WGGAYHKGNW SGYGKDGNIG IKDEDGMNCG PIAGSCTFPT TGTSKSPSPF  60
   61 VDLGAKDATS GIGIGFI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [538-714]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDNIILDLQL SAMEKTGNGE IVSQPKVVTS DKETAKILKG SEVPYQEASS SGATSTSFKE  60
   61 AALSLEVTPQ ITPDNRIIVE VKVTKDAPDY QNMLNGVPPI NKNEVNAKIL VNDGETIVIG 120
  121 GVFSNEQSKS VEKVPFLGEL PYLGRLFRRD TVTDRKNELL VFLTPRIMNN QAIAIGR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits