YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115588672, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115588672, gi....

Description	E-value	Query Range	Subject Range
gi\|68347621, gi\|... - gi\|70733322\|ref\|YP_263096.1\| D-amino acid dehydrogenase small subunit [Pseudomonas fluorescens Pf-5]...	2.0E-87	[1..432]	[1..432]
gi\|84388540, gi\|... - gi\|84388540\|ref\|ZP_00991087.1\| D-amino acid dehydrogenase small subunit [Vibrio splendidus 12B01], g...	3.0E-86	[1..417]	[1..417]
DADA_PSE14 - D-amino acid dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=dad...	5.0E-86	[1..432]	[1..432]
gi\|94417790, gi\|... - gi\|94417790\|ref\|ZP_01297607.1\| hypothetical protein PaerP_01000572 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-85	[1..432]	[1..432]
gi\|73490238 - gi\|73490238\|dbj\|BAE19795.1\| glycine/D-amino acid oxidase [Pseudomonas fluorescens]	2.0E-85	[1..432]	[3..434]
DADA_PSESM - D-amino acid dehydrogenase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dadA PE=3 SV=1 DADA_PSESM - D-amino acid dehydrogenase small subunit OS=Pseudomonas syringae pv. tomato GN=dadA PE=3 SV=1	2.0E-85	[1..432]	[1..432]
gi\|28897397, gi\|... - gi\|28897397\|ref\|NP_797002.1\| D-amino acid dehydrogenase small subunit [Vibrio parahaemolyticus RIMD ... gi\|28805609 - gi\|28805609\|dbj\|BAC58886.1\| D-amino acid dehydrogenase, small subunit [Vibrio parahaemolyticus RIMD ...	2.0E-85	[1..417]	[1..418]
DADA_PSEU2 - D-amino acid dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dadA PE=3 SV=1	2.0E-85	[1..432]	[1..432]
DADA_VIBVU - D-amino acid dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=dadA PE=3 SV=1 DADA_VIBVU - D-amino acid dehydrogenase small subunit OS=Vibrio vulnificus GN=dadA PE=3 SV=1	2.0E-85	[1..417]	[1..416]
tr\|I7B0T4\|I7B0T4... - D-amino acid dehydrogenase small subunit OS=Pseudomonas putida (strain DOT-T1E) GN=dadA PE=3 SV=1 DADA_PSEP1 - D-amino acid dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dadA PE=3 SV=1	2.0E-85	[1..432]	[1..432]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLVLGSGV IGTASAYYLA RAGFEVVVVD RQDGPALETS FANAGQVSPG YASPWAAPGI  60
   61 PLKAMKWLLE KHAPLAIKLT SDPSQYAWML QMLRNCTAER YAVNKERMVR LSEYSRDCLD 120
  121 ELRAETGIAY EGRTLGTTQL FRTQAQLDAA GKDIAVLERS GVPYEVLDRD GIARVEPALA 180
  181 KVADKLVGAL RLPNDQTGDC QLFTTRLAEM AKGLGVEFRF GQNIERLDFA GDRINGVLVN 240
  241 GELLTADHYV LALGSYSPQL LKPLGIKAPV YPLKGYSLTV PITNPEMAPT STILDETYKV 300
  301 AITRFDQRIR VGGMAEIAGF DLSLNPRRRE TLEMITTDLY PEGGDISQAT FWTGLRPATP 360
  361 DGTPIVGATR YRNLFLNTGH GTLGWTMACG SGRYLADLMA KKRPQISTEG LDISRYSNSP 420
  421 ENAKNAHPAP AH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.154902
Match:	2gagB
Description:	No description for 2gagB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits