YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10_METJA
Organism:	Methanocaldococcus jannaschii DSM 2661
Length:	60 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10_METJA.

Description	E-value	Query Range	Subject Range
NOP10_PYRKO - Ribosome biogenesis protein Nop10 OS=Pyrococcus kodakaraensis GN=TK1101 PE=3 SV=1 NOP10_THEKO - Ribosome biogenesis protein Nop10 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KO...	87.0	[0..2]	[59..1]
gi\|14591746 - gi\|14591746\|ref\|NP_142880.1\| H/ACA RNA-protein complex component Nop10p [Pyrococcus horikoshii OT3]	83.0	[0..2]	[60..1]
NOP10_PYRAB, NO1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi GN=PYRAB08470 PE=1 SV=1, (Q9V0E3) Ribosome bi... NOP10_PYRAB - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nop10 PE=1 SV=1	83.0	[0..2]	[60..1]
NO10_PYRFU, NOP1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus GN=PF1141 PE=1 SV=1, (Q8U1R4) Ribosome biog... NOP10_PYRFU - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / ...	82.0	[0..2]	[60..1]
gi\|88192801, gi\|... - gi\|88192802\|pdb\|2EY4\|F Chain F, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex, gi\|88192801\|pdb\|2EY4...	81.0	[0..2]	[56..1]
NOP10_SULTO - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140... NOP10_SULTO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii GN=ST0940.1 PE=3 SV=1, (Q973G1) Ribosome bi...	79.0	[0..2]	[54..1]
gi\|68129679 - gi\|68129679\|emb\|CAJ08985.1\| nuclear protein family a (nop10p), putative [Leishmania major] gi\|157876516 - gi\|157876516\|ref\|XP_001686604.1\| nuclear protein family a (nop10p) [Leishmania major strain Friedlin...	77.0	[0..2]	[58..1]
NOP10_SULSO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus GN=SSO7115 PE=3 SV=1, (Q97Z78) Ribosome... NOP10_SULSO - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 113...	77.0	[0..2]	[53..1]
gi\|83754027, gi\|... - gi\|83754027\|pdb\|2AQC\|A Chain A, Nmr Structural Analysis Of Archaeal Nop10, gi\|159163747\|pdb\|2AQC\|A C...	76.0	[0..1]	[60..4]
NOP10_THEAC - Ribosome biogenesis protein Nop10 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 90... NOP10_THEAC - Ribosome biogenesis protein Nop10 OS=Thermoplasma acidophilum GN=Ta1202 PE=3 SV=1	76.0	[0..2]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEMRMKKCP KCGLYTLKEI CPKCGEKTVI PKPPKFSLED RWGKYRRMLK RALKNKNKAE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2aqcA
Description:	NMR Structural analysis of archaeal Nop10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits