YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPB_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPB_PASMU.

Description	E-value	Query Range	Subject Range
DAPB_HAES1 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Haemophilus somnus (strain 129Pt) GN=dapB PE=3 SV=1	307.0	[0..1]	[270..1]
DAPB_PSEE4 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas entomophila (strain L48) GN=dapB PE=3 SV=1 gi\|95109001 - gi\|95109001\|emb\|CAK13697.1\| dihydrodipicolinate reductase [Pseudomonas entomophila L48]	305.0	[0..2]	[267..1]
DAPB_PSEPK - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain KT2440) GN=dapB PE=3 SV=1	305.0	[0..2]	[267..1]
gi\|213928510, gi... - gi\|213966660\|ref\|ZP_03394811.1\| dihydrodipicolinate reductase [Pseudomonas syringae pv. tomato T1], ... DAPB_PSESM - Dihydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato GN=dapB PE=3 SV=1 DAPB_PSESM - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dap...	304.0	[0..2]	[268..1]
DAPB_HISS2 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Histophilus somni (strain 2336) GN=dapB PE=3 SV=1	304.0	[0..1]	[270..1]
DAPB_PELCD - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) G...	303.0	[0..2]	[267..1]
tr\|I7AV70\|I7AV70... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain DOT-T1E) GN=dapB PE=3 SV=1 tr\|E4R634\|E4R634... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain BIRD-1) GN=dapB PE=3 SV=1 DAPB_PSEP1 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dapB P...	302.0	[0..2]	[267..1]
gi\|53729186 - gi\|53729186\|ref\|ZP_00134031.2\| COG0289: Dihydrodipicolinate reductase [Actinobacillus pleuropneumoni...	302.0	[0..1]	[270..1]
DAPB_PSEU2 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=da...	302.0	[0..2]	[268..1]
DAPB_HAEI8 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Haemophilus influenzae (strain 86-028NP) GN=dapB PE=3 ...	302.0	[0..1]	[270..1]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRVAIVGA GGRMGRQLIQ AVSETEGVVL GAAFERQGSS LLGADAGELA NVGHLGVQIT  60
   61 DDLASQQDQF DLLIDFTRPE GTLAHLAFCV AQHKNMVIGT TGFDDDGKAK IQQAADSIGI 120
  121 VFASNFSVGV NLVFKLLEKA AKVMGDYCDI EIIEAHHRHK VDAPSGTALS MGEHIAKTLG 180
  181 RDLKTHGVFT RDGITGERKR DEIGFATIRA SDVVGEHSVW FADIGERVEI AHKATSRMTF 240
  241 AKGAVRAAKW LAQKEKGLFD MTDVLDLNQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.09691
Match:	1arzA
Description:	Dihydrodipicolinate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.60548927745815	bayes_pls_golite062009
catalytic activity	2.54843319568228	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.54909195188343	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	0.841370849960815	bayes_pls_golite062009
saccharopine dehydrogenase activity	0.495113665163626	bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity	0.0651785123513661	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: