YRC Public Data Repository - Protein Structure Prediction

Protein:	MENB_PASMU
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MENB_PASMU.

Description	E-value	Query Range	Subject Range
gi\|33149130, gi\|... - gi\|33152905\|ref\|NP_874258.1\| naphthoate synthase [Haemophilus ducreyi 35000HP], gi\|33149130\|gb\|AAP96...	304.0	[0..1]	[285..1]
gi\|32029562, gi\|... - gi\|32029562\|ref\|ZP_00132565.1\| COG0447: Dihydroxynaphthoic acid synthase [Haemophilus somnus 2336], ...	303.0	[0..1]	[285..1]
gi\|52307899, gi\|... - gi\|52425847\|ref\|YP_088984.1\| naphthoate synthase [Mannheimia succiniciproducens MBEL55E], gi\|5230789...	301.0	[0..1]	[285..1]
gi\|46143479 - gi\|46143479\|ref\|ZP_00135155.2\| COG0447: Dihydroxynaphthoic acid synthase [Actinobacillus pleuropneum... gi\|126098078, gi... - gi\|126209286\|ref\|YP_001054511.1\| naphthoate synthase [Actinobacillus pleuropneumoniae L20], gi\|12609... gi\|165877362, gi... - gi\|165977261\|ref\|YP_001652854.1\| naphthoate synthase [Actinobacillus pleuropneumoniae serovar 3 str.... gi\|190151179, gi... - gi\|190151179\|ref\|YP_001969704.1\| naphthoate synthase [Actinobacillus pleuropneumoniae serovar 7 str....	301.0	[0..1]	[285..1]
gi\|148828146, gi... - gi\|148828146\|ref\|YP_001292899.1\| naphthoate synthase [Haemophilus influenzae PittGG], gi\|148719388\|g... MENB_HAEIN - Naphthoate synthase OS=Haemophilus influenzae GN=menB PE=3 SV=1 MENB_HAEIN - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW...	299.0	[0..1]	[285..1]
gi\|74276945, gi\|... - gi\|75429737\|ref\|ZP_00732399.1\| dihydroxynaphthoic acid synthase [Actinobacillus succinogenes 130Z], ...	299.0	[0..1]	[285..1]
gi\|42631290 - gi\|42631290\|ref\|ZP_00156828.1\| COG0447: Dihydroxynaphthoic acid synthase [Haemophilus influenzae R28... gi\|46129093 - gi\|46129093\|ref\|ZP_00155738.2\| COG0447: Dihydroxynaphthoic acid synthase [Haemophilus influenzae R28... gi\|144984344 - gi\|144984344\|gb\|EDJ91767.1\| naphthoate synthase [Haemophilus influenzae R3021] gi\|145630063 - gi\|145630063\|ref\|ZP_01785845.1\| naphthoate synthase [Haemophilus influenzae 22.4-21]	299.0	[0..1]	[285..1]
gi\|68057754, gi\|... - gi\|68249555\|ref\|YP_248667.1\| naphthoate synthase [Haemophilus influenzae 86-028NP], gi\|68057754\|gb\|A...	298.0	[0..1]	[285..1]
gi\|62128510, gi\|... - gi\|62180877\|ref\|YP_217294.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Choler...	296.0	[0..1]	[285..1]
gi\|224583208, gi... - gi\|224583208\|ref\|YP_002637006.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Pa... gi\|214003152 - gi\|214003152\|ref\|ZP_03413887.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|29141071, gi\|... - gi\|29141071\|ref\|NP_804413.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16761233 - gi\|16761233\|ref\|NP_456850.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|25291829, gi\|... - gi\|25291829\|pir\|\|AB0795 naphthoate synthase (EC 4.1.3.36) [imported] - Salmonella enterica subsp. en... MENB_SALTY - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70072... gi\|168242426, gi... - gi\|205338272\|gb\|EDZ25036.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Heidelb... lcl\|NC_016856.1_... - [gene=menB] [protein=naphthoate synthase] [protein_id=YP_005238381.1] [location=complement(2465552..... gi\|168237325, gi... - gi\|197289652\|gb\|EDY29015.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Schwarz... gi\|205335686, gi... - gi\|205335686\|gb\|EDZ22450.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Kentuck... gi\|167992643, gi... - gi\|205329235\|gb\|EDZ15999.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|194402127, gi... - gi\|194443464\|ref\|YP_002041568.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Ne... gi\|205344887, gi... - gi\|205344887\|gb\|EDZ31651.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Weltevr... gi\|168465992, gi... - gi\|195631525\|gb\|EDX50085.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Newport... gi\|168261676, gi... - gi\|205349651\|gb\|EDZ36282.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Hadar s... gi\|167549697, gi... - gi\|205325360\|gb\|EDZ13199.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Saintpa... gi\|161612968, gi... - gi\|161612968\|ref\|YP_001586933.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Pa... gi\|213052924 - gi\|213052924\|ref\|ZP_03345802.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213024569 - gi\|213024569\|ref\|ZP_03339016.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|206709528, gi... - gi\|207857725\|ref\|YP_002244376.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar En... gi\|204929052, gi... - gi\|204929052\|ref\|ZP_03220195.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Jav... gi\|213854895 - gi\|213854895\|ref\|ZP_03383135.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213648582 - gi\|213648582\|ref\|ZP_03378635.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213427029 - gi\|213427029\|ref\|ZP_03359779.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|213419276 - gi\|213419276\|ref\|ZP_03352342.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Typ... gi\|56412795, gi\|... - gi\|56412795\|ref\|YP_149870.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Paraty... gi\|197251548, gi... - gi\|197251548\|ref\|YP_002147263.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Ag... gi\|194736334, gi... - gi\|194736334\|ref\|YP_002115377.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Sc... gi\|194456292, gi... - gi\|194469928\|ref\|ZP_03075912.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Ken... gi\|194407937, gi... - gi\|194449633\|ref\|YP_002046361.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar He... gi\|199604287, gi... - gi\|200387189\|ref\|ZP_03213801.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Vir... gi\|198243876, gi... - gi\|198243876\|ref\|YP_002216375.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Du... gi\|197093205, gi... - gi\|197361729\|ref\|YP_002141365.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Pa... MENB_SALTY - 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium GN=menB PE=1 SV=1 gi\|197240069, gi... - gi\|197261814\|ref\|ZP_03161888.1\| naphthoate synthase [Salmonella enterica subsp. enterica serovar Sai...	295.0	[0..1]	[285..1]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNPKDDVLY APIEWQDHSE GYTDILYHKS LDGIAKITIN RPEVRNAFRP QTVKEMIQAF  60
   61 ADARFDEQIG VIVLTGQGEK AFCSGGDQKV RGDYGGYQDE SGVHHLNVLD FQRDIRTCPK 120
  121 PVVAMVAGYA IGGGHVLHMI CDLTIAADNA IFGQTGPKVG SFDGGWGASY MARIVGQKKA 180
  181 REIWFLCRQY DAKEALEMGL VNTVVPYAEL EKETVRWCRE MLRNSPIALR CLKAALNADC 240
  241 DGQAGLQELA GNATMLFYMT EEGQEGRNAF NEKRAPDFSK FKRNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.221849
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits