YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15603144, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15603144, gi|....

Description	E-value	Query Range	Subject Range
gi\|25502754 - pir\|\|D95916 hypothetical protein SMb21023 [imported] - Sinorhizobium meliloti (strain 1021) magaplas... gi\|15140481, gi\|... - gi\|16264344\|ref\|NP_437136.1\| hypothetical protein SM_b21023 [Sinorhizobium meliloti 1021], gi\|151404...	104.0	[0..1]	[98..1]
gi\|7470153 - pir\|\|S77088 hypothetical protein sll1783 - Synechocystis sp. (strain PCC 6803) Y1783_SYNY3 - Uncharacterized protein sll1783 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1783 PE=3 SV=1 YH83_SYNY3, Y178... - (P73602) Hypothetical protein sll1783, Uncharacterized protein sll1783 OS=Synechocystis sp. (strain ...	98.0	[0..2]	[91..50]
gi\|37522426, gi\|... - gi\|37522426\|ref\|NP_925803.1\| hypothetical protein gsl2857 [Gloeobacter violaceus PCC 7421], gi\|35213...	97.0	[0..2]	[95..5]
gi\|37678340, gi\|... - gi\|37678340\|ref\|NP_932949.1\| hypothetical protein VV0156 [Vibrio vulnificus YJ016], gi\|37197079\|dbj\|...	97.0	[0..1]	[94..1]
gi\|192286296, gi... - gi\|192292547\|ref\|YP_001993152.1\| Antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris T... RPA3659 - RPA3659 DUF176 4132804:4133103 reverse MW:10962	96.0	[0..1]	[93..1]
gi\|25512822, gi\|... - gi\|25512822\|pir\|\|AF0940 conserved hypothetical protein STY3791 [imported] - Salmonella enterica subs... gi\|29143844, gi\|... - gi\|29143844\|ref\|NP_807186.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica subsp.... gi\|205359967, gi... - gi\|205359967\|ref\|ZP_02833569.2\| LsrG protein [Salmonella enterica subsp. enterica serovar Weltevrede... gi\|205336882, gi... - gi\|205359332\|ref\|ZP_02669097.2\| LsrG protein [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|16762356 - gi\|16762356\|ref\|NP_457973.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica subsp.... gi\|194711371, gi... - gi\|194735869\|ref\|YP_002117000.1\| LsrG protein [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|194410138, gi... - gi\|194451834\|ref\|YP_002048081.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica su... gi\|56415924, gi\|... - gi\|56415924\|ref\|YP_152999.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica subsp.... gi\|161617212, gi... - gi\|161617212\|ref\|YP_001591177.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica su... gi\|204930204, gi... - gi\|204930204\|ref\|ZP_03221181.1\| LsrG protein [Salmonella enterica subsp. enterica serovar Javiana st... gi\|199605520, gi... - gi\|200388422\|ref\|ZP_03215034.1\| LsrG protein [Salmonella enterica subsp. enterica serovar Virchow st... gi\|197096328, gi... - gi\|197364851\|ref\|YP_002144488.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica su... gi\|197300984, gi... - gi\|197300984\|ref\|ZP_02662763.2\| LsrG protein [Salmonella enterica subsp. enterica serovar Schwarzeng...	96.0	[0..1]	[96..14]
gi\|42782130, gi\|... - gi\|42782130\|ref\|NP_979377.1\| hypothetical protein BCE_3074 [Bacillus cereus ATCC 10987], gi\|42738054...	96.0	[0..1]	[95..1]
gi\|62130171, gi\|... - gi\|62182538\|ref\|YP_218955.1\| autoinducer-2 (AI-2) modifying protein LsrG [Salmonella enterica subsp.... gi\|198242713, gi... - gi\|198242713\|ref\|YP_002218004.1\| LsrG protein [Salmonella enterica subsp. enterica serovar Dublin st...	96.0	[0..1]	[96..14]
gi\|91977964, gi\|... - gi\|91977964\|ref\|YP_570623.1\| antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris BisB5...	95.0	[0..1]	[97..1]
gi\|86572017, gi\|... - gi\|86748989\|ref\|YP_485485.1\| antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris HaA2]...	95.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAMLVEINI KEGKEQEFLE VFARNHIGTR QEPGNLRFDV LRDPEIKTRF YAYEVYVNEQ  60
   61 ALEAHRQTAH YHRCVAELEP LMTGARSKKL FDWVMPENLT NECG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2gffA
Description:	No description for 2gffA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits