YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33239716, gi\|...
Organism:	Prochlorococcus marinus subsp. marinus str. CCMP1375
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33239716, gi|....

Description	E-value	Query Range	Subject Range
gi\|46134818, gi\|... - gi\|75907458\|ref\|YP_321754.1\| creatininase [Anabaena variabilis ATCC 29413], gi\|75701183\|gb\|ABA20859....	327.0	[0..19]	[263..1]
gi\|17231775, gi\|... - gi\|17231775\|ref\|NP_488323.1\| hypothetical protein all4283 [Nostoc sp. PCC 7120], gi\|17133418\|dbj\|BAB... gi\|25531747 - pir\|\|AD2341 hypothetical protein all4283 [imported] - Nostoc sp. (strain PCC 7120)	323.0	[0..19]	[263..1]
gi\|23127632, gi\|... - gi\|23127632\|ref\|ZP_00109497.1\| COG1402: Uncharacterized protein, putative amidase [Nostoc punctiform...	322.0	[0..19]	[262..1]
gi\|48892120, gi\|... - gi\|71677710\|ref\|ZP_00675445.1\| Creatininase [Trichodesmium erythraeum IMS101], gi\|71669130\|gb\|EAO258...	319.0	[0..19]	[265..1]
gi\|22295116, gi\|... - gi\|22298935\|ref\|NP_682182.1\| hypothetical protein tlr1392 [Thermosynechococcus elongatus BP-1], gi\|2...	319.0	[0..20]	[264..3]
gi\|56685831, gi\|... - gi\|56750872\|ref\|YP_171573.1\| hypothetical protein syc0863_d [Synechococcus elongatus PCC 6301], gi\|5... gi\|45511710, gi\|... - gi\|81299476\|ref\|YP_399684.1\| hypothetical protein Synpcc7942_0665 [Synechococcus elongatus PCC 7942]...	312.0	[0..19]	[264..1]
gi\|67923616, gi\|... - gi\|67923616\|ref\|ZP_00517087.1\| Creatininase [Crocosphaera watsonii WH 8501], gi\|67854540\|gb\|EAM49828...	312.0	[0..19]	[264..1]
gi\|84518694, gi\|... - gi\|84518694\|ref\|ZP_01006043.1\| Predicted amidase [Prochlorococcus marinus str. MIT 9211], gi\|8451344...	307.0	[0..17]	[265..12]
gi\|7469683 - pir\|\|S76664 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi\|1001770, gi\|1... - gi\|16331810\|ref\|NP_442538.1\| hypothetical protein sll0596 [Synechocystis sp. PCC 6803], gi\|1001770\|d...	307.0	[0..19]	[265..1]
gi\|33635665, gi\|... - gi\|33864081\|ref\|NP_895641.1\| creatininase [Prochlorococcus marinus str. MIT 9313], gi\|33635665\|emb\|C...	304.0	[0..9]	[263..5]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKNKLDLP TSLSKNSSMR LDLWTWKEVE KYLVNCKGII LPIGSTEQHG PTGAIGTDAM  60
   61 TAEAVAREVG IRTGVLVTPT QPYGMAEHHL GFPGTMSLRS STLQKLIHDL LISLVMHGFQ 120
  121 RIFIINGHGG NIASIKAAFS EVYNTASSRH LPVAKSLRFK LANWFMSPEV FRQARALYGE 180
  181 REGQHATPSE IALTLHLEPS LLAKQSELPD PAPAGPIYTY KDFRQRYPDG RMGSDPFLAK 240
  241 AEDGEMFLDK AASALSNDLI DFLKET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.221849
Match:	1j2tA
Description:	Creatininase Mn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.13806785143726	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	1.02192960993617	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.61659135281905	bayes_pls_golite062009
hydrolase activity	0.257680585858544	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: