YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33240411, gi\|...
Organism:	Prochlorococcus marinus subsp. marinus str. CCMP1375
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33240411, gi|....

Description	E-value	Query Range	Subject Range
gi\|17133602, gi\|... - gi\|17231958\|ref\|NP_488506.1\| Ap4A phosphorylase II [Nostoc sp. PCC 7120], gi\|17133602\|dbj\|BAB76165.1... gi\|25530194 - pir\|\|AB2364 Ap4A phosphorylase II [imported] - Nostoc sp. (strain PCC 7120)	388.0	[0..1]	[278..10]
gi\|75703260, gi\|... - gi\|75909535\|ref\|YP_323831.1\| Ap4A phosphorylase II [Anabaena variabilis ATCC 29413], gi\|75703260\|gb\|...	381.0	[0..1]	[278..10]
gi\|33634921, gi\|... - gi\|33863004\|ref\|NP_894564.1\| putative ATP adenylyltransferase [Prochlorococcus marinus str. MIT 9313...	365.0	[0..1]	[278..1]
gi\|48891692, gi\|... - gi\|71678064\|ref\|ZP_00675794.1\| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...	355.0	[0..1]	[279..8]
gi\|33634008, gi\|... - gi\|33861431\|ref\|NP_892992.1\| putative ATP adenylyltransferase [Prochlorococcus marinus subsp. pastor...	355.0	[0..1]	[278..1]
gi\|53687949 - gi\|53687949\|ref\|ZP_00345508.1\| COG4360: ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phos...	353.0	[0..1]	[278..10]
gi\|33632937, gi\|... - gi\|33865767\|ref\|NP_897326.1\| ATP adenylyltransferase [Synechococcus sp. WH 8102], gi\|33632937\|emb\|CA...	348.0	[0..1]	[279..1]
gi\|67854047, gi\|... - gi\|67924122\|ref\|ZP_00517568.1\| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...	339.0	[0..1]	[277..9]
gi\|78779310, gi\|... - gi\|78779310\|ref\|YP_397422.1\| putative ATP adenylyltransferase [Prochlorococcus marinus str. MIT 9312...	316.0	[0..1]	[278..1]
gi\|113953442, gi... - gi\|113953442\|ref\|YP_730553.1\| ATP adenylyltransferase [Synechococcus sp. CC9311], gi\|113880793\|gb\|AB...	315.0	[0..1]	[278..1]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQENYWIKS LSLSKNALEN SSLKPINTNL EYLSTATNLI FEYRRVSSIN FKFSTTFGPK  60
   61 ENPFRPWDKR LQIDTIGNNH ILILNKYPVQ IGHMLLITRK WYPQDGWLNQ TDWEALKAVE 120
  121 KDTSGLWFFN SGPKAGASQN HRHLQLLRRK ILDISCPLES WYEGNQNINL CESSLLRRNI 180
  181 CSAKRSIKNE TAYDLHNTYI RLCDRIGLGA PDDSTKPNYP YNLLISPNWI GIIRRSKEYA 240
  241 YGFSLNALAF AGYLLGTNKS NNDWLNKNGP IKLLEEVVAD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.01
Match:	1fhiA
Description:	SUBSTRATE ANALOG (IB2) COMPLEX WITH THE FRAGILE HISTIDINE TRIAD PROTEIN, FHIT
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits