YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33238229, gi\|...
Organism:	Prochlorococcus marinus subsp. marinus str. CCMP1375
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33238229, gi|....

Description	E-value	Query Range	Subject Range
gi\|86556992, gi\|... - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-2-3B'a... gi\|86608450 - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto...	245.0	[0..1]	[166..1]
gi\|7436727 - gi\|7436727\|pir\|\|S74358 acetolactate synthase ilvN - Synechocystis sp. (strain PCC 6803) gi\|16331478, gi\|... - gi\|16331478\|ref\|NP_442206.1\| acetolactate synthase 3 regulatory subunit [Synechocystis sp. PCC 6803]...	244.0	[0..1]	[167..17]
gi\|86606770 - gi\|86606770\|ref\|YP_475533.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto... gi\|86606770, gi\|... - gi\|86606770\|ref\|YP_475533.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-3-3Ab]...	241.0	[0..1]	[166..1]
gi\|67921725, gi\|... - gi\|67921725\|ref\|ZP_00515242.1\| Acetolactate synthase, small subunit [Crocosphaera watsonii WH 8501],...	241.0	[0..1]	[167..1]
gi\|22298423, gi\|... - gi\|22298423\|ref\|NP_681670.1\| acetolactate synthase 3 regulatory subunit [Thermosynechococcus elongat...	241.0	[0..1]	[167..1]
gi\|23127611, gi\|... - gi\|23127611\|ref\|ZP_00109476.1\| COG0440: Acetolactate synthase, small (regulatory) subunit [Nostoc pu...	238.0	[0..1]	[167..1]
gi\|116066512, gi... - gi\|116071107\|ref\|ZP_01468376.1\| acetolactate synthase III small subunit [Synechococcus sp. BL107], g...	237.0	[0..1]	[168..1]
gi\|113882462, gi... - gi\|113955111\|ref\|YP_730113.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. CC9311],...	236.0	[0..1]	[168..1]
gi\|86167749, gi\|... - gi\|87124870\|ref\|ZP_01080718.1\| Acetolactate synthase small subunit [Synechococcus sp. RS9917], gi\|86...	235.0	[0..1]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHTLSVLVE DQSGALSRIS GLFARRGFNI NSLAVGPAEA EGISRLTMVV EGDHQTLQQM  60
   61 TKQLDKLINV LKVVDLTTFP AVERELMLLK VSATNEKRTS ILDLVQVFRA KVVDVSDDAL 120
  121 TLEVVGDPGK LVALEKLLKP YGILEIARTG KVALERASGV NTEMLKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2pc6A
Description:	No description for 2pc6A was found.

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	14.1096734416761	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	12.4176994384119	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: