YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33151849, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33151849, gi|....

Description	E-value	Query Range	Subject Range
gi\|16505585, gi\|... - gi\|25355624\|pir\|\|AD1061 DNA polymerase III, chi chain [imported] - Salmonella enterica subsp. enteri... gi\|16763277 - gi\|16763277\|ref\|NP_458894.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... gi\|29144756, gi\|... - gi\|29144756\|ref\|NP_808098.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... gi\|197939984, gi... - gi\|198245468\|ref\|YP_002218340.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enteric... gi\|56416248, gi\|... - gi\|56416248\|ref\|YP_153323.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... gi\|197240684, gi... - gi\|197262429\|ref\|ZP_03162503.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica... gi\|197096648, gi... - gi\|197365171\|ref\|YP_002144808.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica...	189.0	[0..3]	[150..8]
gi\|16423041 - gi\|16423041\|gb\|AAL23295.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica sero...	188.0	[0..3]	[150..8]
gi\|112823450, gi... - gi\|23467212\|ref\|ZP_00122796.1\| COG2927: DNA polymerase III, chi subunit [Haemophilus somnus 129PT], ...	186.0	[0..9]	[151..2]
gi\|168827096, gi... - gi\|46156228\|ref\|ZP_00133222.2\| COG2927: DNA polymerase III, chi subunit [Haemophilus somnus 2336], g...	184.0	[0..9]	[151..2]
gi\|46133455 - gi\|46133455\|ref\|ZP_00157234.2\| COG2927: DNA polymerase III, chi subunit [Haemophilus influenzae R286... gi\|145639006, gi... - gi\|145639006\|ref\|ZP_01794614.1\| DNA polymerase III subunit chi [Haemophilus influenzae PittII], gi\|1... gi\|144978355, gi... - gi\|145629512\|ref\|ZP_01785310.1\| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21], gi\|...	182.0	[0..10]	[151..3]
gi\|229810237, gi... - gi\|229846748\|ref\|ZP_04466855.1\| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1], gi\|2... gi\|48866770, gi\|... - gi\|68250085\|ref\|YP_249197.1\| DNA polymerase III subunit chi [Haemophilus influenzae 86-028NP], gi\|68... gi\|144986509, gi... - gi\|145632853\|ref\|ZP_01788586.1\| DNA polymerase III subunit chi [Haemophilus influenzae 3655], gi\|144...	181.0	[0..10]	[151..3]
gi\|194423254, gi... - gi\|83586716\|ref\|ZP_00925348.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli 101-1], gi...	180.0	[0..9]	[150..1]
HOLC_HAEIN - DNA polymerase III subunit chi OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)... HOLC_HAEIN - DNA polymerase III subunit chi OS=Haemophilus influenzae GN=holC PE=3 SV=1	180.0	[0..10]	[151..3]
gi\|169891533, gi... - gi\|170083698\|ref\|YP_001733018.1\| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.... gi\|238860832, gi... - gi\|238903360\|ref\|YP_002929156.1\| DNA polymerase III, chi subunit [Escherichia coli BW2952], gi\|23886... HOLC_ECOLI - DNA polymerase III subunit chi (EC 2.7.7.7) - Escherichia coli gi\|89110975, gi\|... - gi\|89110975\|ref\|AP_004755.1\| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. W31... EG11413 - DNA polymerase III, chi subunit / DNA polymerase III, chi subunit EG11413 - DNA polymerase III, chi subunit / DNA polymerase III, chi subunit	179.0	[0..9]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPSSRDSVK QVKFYLLSQL GSDDLSAAEA MACELAAQAW RSGKRVLIAC ETEQQALNID  60
   61 EALWAREPDS FVPHNLAGEF TQYATPIEIC WQNKRNAQRR DFLISLQTNL PDYINTFTQI 120
  121 IDFVPIDEKE KVHARERYKQ YRQLGWQLVT EQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1em8A
Description:	Crystal structure of chi and psi subunit heterodimer from DNA POL III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	10.5323303172282	bayes_pls_golite062009
DNA polymerase activity	10.4830348241445	bayes_pls_golite062009
nucleotidyltransferase activity	7.90238563893338	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	3.96930833729486	bayes_pls_golite062009
transferase activity	3.35643625144672	bayes_pls_golite062009
exonuclease activity	1.41483511359931	bayes_pls_golite062009
catalytic activity	1.13824203225664	bayes_pls_golite062009
5'-3' exonuclease activity	0.602142505358069	bayes_pls_golite062009
nuclease activity	0.0887585005803604	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: