YRC Public Data Repository - Protein Structure Prediction

Protein:	TATB_HAEDU
Organism:	Haemophilus ducreyi 35000HP
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TATB_HAEDU.

Description	E-value	Query Range	Subject Range
TATB_ECOL5 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) ... TATB_ECOL6 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6 GN=tatB PE=3 SV=1 TATB_ECOUT - Sec-independent protein translocase protein TatB OS=Escherichia coli (strain UTI89 / UPEC) GN=tatB P... gi\|75237628, gi\|... - gi\|75237628\|ref\|ZP_00721648.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|218367689, gi... - gi\|218560920\|ref\|YP_002393833.1\| sec-independent translocase [Escherichia coli S88], gi\|218367689\|em... gi\|215267250, gi... - gi\|215489178\|ref\|YP_002331609.1\| sec-independent translocase [Escherichia coli O127:H6 str. E2348/69... gi\|218692131, gi... - gi\|218692131\|ref\|YP_002400343.1\| sec-independent translocase [Escherichia coli ED1a], gi\|218429695\|e... gi\|227888549, gi... - gi\|227888549\|ref\|ZP_04006354.1\| sec-independent translocase [Escherichia coli 83972], gi\|227834388\|g... gi\|237702872, gi... - gi\|237702872\|ref\|ZP_04533353.1\| sec-independent translocase [Escherichia sp. 3_2_53FAA], gi\|22690304... TATB_ECOL6 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700...	114.0	[0..1]	[158..1]
gi\|192958595, gi... - gi\|75238287\|ref\|ZP_00722286.1\| COG1826: Sec-independent protein secretion pathway components [Escher...	114.0	[0..1]	[158..1]
gi\|253975697, gi... - gi\|254163796\|ref\|YP_003046904.1\| sec-independent translocase [Escherichia coli B str. REL606], gi\|25... gi\|254595235, gi... - gi\|254795835\|ref\|YP_003080672.1\| component of Sec-independent translocase [Escherichia coli O157:H7 ... gi\|24054405, gi\|... - gi\|24115133\|ref\|NP_709643.1\| sec-independent translocase [Shigella flexneri 2a str. 301], gi\|2405440... gi\|30043126, gi\|... - gi\|30064866\|ref\|NP_839037.1\| sec-independent translocase [Shigella flexneri 2a str. 2457T], gi\|30043... TATB_SHIFL - Sec-independent protein translocase protein TatB OS=Shigella flexneri GN=tatB PE=3 SV=1 TATB_ECO57 - Sec-independent protein translocase protein TatB OS=Escherichia coli O157:H7 GN=tatB PE=3 SV=1 EG14322 - TatABCE protein translocation system subunit / Protein translocase, Sec-independent; mediates export... TATB_ECOLI - Sec-independent protein translocase protein tatB - Escherichia coli gi\|124499192, gi... - gi\|124530426\|ref\|ZP_01701084.1\| twin-arginine translocation protein, TatB subunit [Escherichia coli ... gi\|161367481 - gi\|161367481\|ref\|NP_290469.2\| sec-independent translocase [Escherichia coli O157:H7 EDL933] gi\|168750345, gi... - gi\|188015448\|gb\|EDU53570.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|161986409 - gi\|161986409\|ref\|YP_312769.2\| sec-independent translocase [Shigella sonnei Ss046] gi\|187768881, gi... - gi\|187768881\|gb\|EDU32725.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|189365992, gi... - gi\|189365992\|gb\|EDU84408.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|189373209, gi... - gi\|189373209\|gb\|EDU91625.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|168780742, gi... - gi\|189001590\|gb\|EDU70576.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|75209536, gi\|... - gi\|75209536\|ref\|ZP_00709757.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|209914575, gi... - gi\|209921316\|ref\|YP_002295400.1\| sec-independent translocase [Escherichia coli SE11], gi\|209914575\|d... gi\|190903906, gi... - gi\|75230798\|ref\|ZP_00717261.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|209400771, gi... - gi\|209400771\|ref\|YP_002273356.1\| twin arginine-targeting protein translocase TatB [Escherichia coli ... EG14322 - TatABCE protein translocation system subunit / Protein translocase, Sec-independent; mediates export... gi\|193065714, gi... - gi\|75256239\|ref\|ZP_00727917.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|218556403, gi... - gi\|218556403\|ref\|YP_002389317.1\| sec-independent translocase [Escherichia coli IAI1], gi\|218363172\|e... gi\|188487895, gi... - gi\|75512608\|ref\|ZP_00735120.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|217321900, gi... - gi\|217325679\|ref\|ZP_03441763.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|89110183, gi\|... - gi\|89110183\|ref\|AP_003963.1\| TatABCE protein translocation system subunit [Escherichia coli str. K-1... gi\|218371444, gi... - gi\|218701458\|ref\|YP_002409087.1\| sec-independent translocase [Escherichia coli IAI39], gi\|218371444\|... gi\|218697558, gi... - gi\|218697558\|ref\|YP_002405225.1\| sec-independent translocase [Escherichia coli 55989], gi\|218354290\|... gi\|218434567, gi... - gi\|218707470\|ref\|YP_002414989.1\| sec-independent translocase [Escherichia coli UMN026], gi\|218434567... gi\|13364243, gi\|... - gi\|15834021\|ref\|NP_312794.1\| sec-independent translocase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|169757069, gi... - gi\|170022141\|ref\|YP_001727095.1\| sec-independent translocase [Escherichia coli ATCC 8739], gi\|169757... TATB_SHIF8 - Sec-independent protein translocase protein TatB OS=Shigella flexneri serotype 5b (strain 8401) GN=t... gi\|168801093, gi... - gi\|189376695\|gb\|EDU95111.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|170518329, gi... - gi\|170680611\|ref\|YP_001746171.1\| twin arginine-targeting protein translocase TatB [Escherichia coli ... gi\|169891152, gi... - gi\|170083317\|ref\|YP_001732637.1\| TatABCE protein translocation system subunit [Escherichia coli str.... gi\|194434077, gi... - gi\|83569327\|ref\|ZP_00920782.1\| COG1826: Sec-independent protein secretion pathway components [Shigel... gi\|208727891, gi... - gi\|208808090\|ref\|ZP_03250427.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|238902912, gi... - gi\|238902912\|ref\|YP_002928708.1\| TatABCE protein translocation system subunit [Escherichia coli BW29... gi\|194438583, gi... - gi\|83585902\|ref\|ZP_00924541.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|195938129 - gi\|195938129\|ref\|ZP_03083511.1\| sec-independent translocase [Escherichia coli O157:H7 str. EC4024] gi\|251787109, gi... - gi\|251787109\|ref\|YP_003001413.1\| hypothetical protein B21_03679 [Escherichia coli BL21], gi\|24237938... gi\|157159437, gi... - gi\|75188579\|ref\|ZP_00701846.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|208741819, gi... - gi\|208821696\|ref\|ZP_03262016.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|254290546, gi... - gi\|254290546\|ref\|YP_003056294.1\| sec-independent translocase [Escherichia coli BL21(DE3)], gi\|253979... gi\|75197720, gi\|... - gi\|75197720\|ref\|ZP_00707790.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|208734088, gi... - gi\|208812811\|ref\|ZP_03254140.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|254039050, gi... - gi\|254039050\|ref\|ZP_04873101.1\| twin arginine-targeting protein translocase TatB [Escherichia sp. 1_...	113.0	[0..1]	[158..1]
gi\|161984818 - gi\|161984818\|ref\|YP_410137.2\| sec-independent translocase [Shigella boydii Sb227] gi\|75177803, gi\|... - gi\|75177803\|ref\|ZP_00697868.1\| COG1826: Sec-independent protein secretion pathway components [Shigel...	113.0	[0..1]	[158..1]
TATB_ECOK1 - Sec-independent protein translocase protein TatB OS=Escherichia coli O1:K1 / APEC GN=tatB PE=3 SV=1	113.0	[0..1]	[158..1]
TATB_SALTY - Sec-independent protein translocase protein TatB OS=Salmonella typhimurium GN=tatB PE=3 SV=2 TATB_SALPA - Sec-independent protein translocase protein TatB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB4... lcl\|NC_016856.1_... - [gene=tatB] [protein=sec-independent translocase] [protein_id=YP_005240239.1] [location=4194453..419... TATB_SALCH - Sec-independent protein translocase protein TatB OS=Salmonella choleraesuis (strain SC-B67) GN=tatB ... gi\|197265301, gi... - gi\|197265301\|ref\|ZP_03165375.1\| Sec-independent protein translocase protein TatB [Salmonella enteric... gi\|197211185, gi... - gi\|197247482\|ref\|YP_002148900.1\| Sec-independent protein translocase protein TatB [Salmonella enteri... gi\|194448272, gi... - gi\|194448272\|ref\|YP_002047984.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|194401136, gi... - gi\|194442473\|ref\|YP_002043203.1\| Sec-independent protein translocase protein TatB [Salmonella enteri... gi\|205354467, gi... - gi\|205354467\|ref\|YP_002228268.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|200388897, gi... - gi\|200388897\|ref\|ZP_03215509.1\| Sec-independent protein translocase protein TatB [Salmonella enteric... TATB_SALCH - Sec-independent protein translocase protein TatB OS=Salmonella choleraesuis GN=tatB PE=3 SV=1 TATB_SALTY - Sec-independent protein translocase protein tatB OS=Salmonella typhimurium GN=tatB PE=3 SV=2 gi\|198243843, gi... - gi\|198243843\|ref\|YP_002217901.1\| Sec-independent protein translocase protein TatB [Salmonella enteri... gi\|197364758, gi... - gi\|197364758\|ref\|YP_002144395.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... TATB_SALTY - Sec-independent protein translocase protein TatB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ... gi\|205328128, gi... - gi\|205328128\|gb\|EDZ14892.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|167553390, gi... - gi\|205322159\|gb\|EDZ09998.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|161617097, gi... - gi\|161617097\|ref\|YP_001591062.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|168822654, gi... - gi\|205340937\|gb\|EDZ27701.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|168467609, gi... - gi\|195629955\|gb\|EDX48615.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|205348256, gi... - gi\|205348256\|gb\|EDZ34887.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|205336503, gi... - gi\|205336503\|gb\|EDZ23267.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... TATB_SALCH - Sec-independent protein translocase protein tatB homolog OS=Salmonella choleraesuis GN=tatB PE=3 SV=... gi\|238912978 - gi\|238912978\|ref\|ZP_04656815.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... TATB_SALPA - Sec-independent protein translocase protein TatB OS=Salmonella paratyphi A GN=tatB PE=3 SV=1 gi\|224585789, gi... - gi\|224585789\|ref\|YP_002639588.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|206710977, gi... - gi\|207859174\|ref\|YP_002245825.1\| sec-independent translocase [Salmonella enterica subsp. enterica se...	110.0	[0..1]	[156..1]
gi\|213162209 - gi\|213162209\|ref\|ZP_03347919.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... TATB_SALTI - Sec-independent protein translocase protein tatB OS=Salmonella typhi GN=tatB PE=3 SV=1 gi\|16762160 - gi\|16762160\|ref\|NP_457777.1\| sec-independent translocase [Salmonella enterica subsp. enterica serova... gi\|213854777 - gi\|213854777\|ref\|ZP_03383017.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... gi\|213646463 - gi\|213646463\|ref\|ZP_03376516.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... TATB_SALTI - Sec-independent protein translocase protein TatB OS=Salmonella typhi GN=tatB PE=3 SV=1 gi\|29143649, gi\|... - gi\|29143649\|ref\|NP_806991.1\| sec-independent translocase [Salmonella enterica subsp. enterica serova... gi\|214002447 - gi\|214002447\|ref\|ZP_03413182.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... gi\|213427338 - gi\|213427338\|ref\|ZP_03360088.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... gi\|213421433 - gi\|213421433\|ref\|ZP_03354499.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... gi\|213614465 - gi\|213614465\|ref\|ZP_03371291.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... gi\|213583368 - gi\|213583368\|ref\|ZP_03365194.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser...	109.0	[0..1]	[156..1]
gi\|46911761, gi\|... - gi\|54307341\|ref\|YP_128361.1\| sec-independent translocase [Photobacterium profundum SS9], gi\|46911761...	108.0	[0..1]	[112..1]
gi\|46143203 - gi\|46143203\|ref\|ZP_00135686.2\| COG1826: Sec-independent protein secretion pathway components [Actino...	106.0	[0..1]	[114..1]
TATB_PEA - Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum GN=TATB PE=1 SV=1	105.0	[0..1]	[158..89]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDIGFSELI LIFVVGLVVL GPQRLPVAIR TVMGWVRTIR SLATNVQHEL AQELKLQELQ  60
   61 ESIKKAEAMN LT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.957
Match:	1f6gA
Description:	Potassium channel protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [73-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLSPELTQTV EDLKQSAQKM QNDLNNANQI GKLTDEQVAD IQQNIANAQP SEITEANELD  60
   61 ESKLTAYYPP DDDLVSPSTT KLEQDKQNVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits