YRC Public Data Repository - Protein Structure Prediction

Protein:	TAL_THEMA
Organism:	Thermotoga maritima MSB8
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAL_THEMA.

Description	E-value	Query Range	Subject Range
gi\|58177039, gi\|... - gi\|58177049\|pdb\|1VPX\|T Chain T, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295) From Thermo...	323.0	[0..1]	[218..13]
TAL_AQUAE - Probable transaldolase OS=Aquifex aeolicus (strain VF5) GN=tal PE=3 SV=1 TAL_AQUAE - Probable transaldolase OS=Aquifex aeolicus GN=tal PE=3 SV=1	316.0	[0..1]	[214..1]
TAL_METJA - Probable transaldolase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM ... TAL_METJA - Probable transaldolase OS=Methanocaldococcus jannaschii GN=tal PE=3 SV=1	311.0	[0..1]	[217..1]
TAL_GEOUR - Probable transaldolase OS=Geobacter uraniireducens (strain Rf4) GN=tal PE=3 SV=1	305.0	[0..1]	[214..1]
TAL_METMP - Probable transaldolase OS=Methanococcus maripaludis (strain S2 / LL) GN=tal PE=3 SV=1 TAL_METMP - Probable transaldolase OS=Methanococcus maripaludis GN=tal PE=3 SV=1	305.0	[0..1]	[213..1]
TAL_GEOMG - Probable transaldolase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tal PE...	303.0	[0..1]	[214..1]
TAL_ANADE - Probable transaldolase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tal PE=3 SV=1	303.0	[0..1]	[217..1]
TAL_GEOSL - Probable transaldolase OS=Geobacter sulfurreducens GN=tal PE=3 SV=1 TAL_GEOSL - Probable transaldolase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=tal PE=3...	302.0	[0..1]	[214..1]
gi\|78218522, gi\|... - gi\|78356117\|ref\|YP_387566.1\| transaldolase, putative [Desulfovibrio desulfuricans G20], gi\|78218522\|...	299.0	[0..1]	[215..61]
gi\|67981420, gi\|... - gi\|95928268\|ref\|ZP_01311016.1\| transaldolase, putative [Desulfuromonas acetoxidans DSM 684], gi\|9513...	296.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFLDTANL EEIKKGVEWG IVDGVTTNPT LISKEGAEFK QRVKEICDLV KGPVSAEVVS  60
   61 LDYEGMVREA RELAQISEYV VIKIPMTPDG IKAVKTLSAE GIKTNVTLVF SPAQAILAAK 120
  121 AGATYVSPFV GRMDDLSNDG MRMLGEIVEI YNNYGFETEI IAASIRHPMH VVEAALMGVD 180
  181 IVTMPFAVLE KLFKHPMTDL GIERFMEDWK KYLENLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.522879
Match:	1vpxA
Description:	Crystal structure of Transaldolase (EC 2.2.1.2) (TM0295) from Thermotoga maritima at 2.40 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	3.28746773527289	bayes_pls_golite062009
transaldolase activity	2.77878684721788	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.41110985630781	bayes_pls_golite062009
porphobilinogen synthase activity	0.658378297259497	bayes_pls_golite062009
fructose binding	0.427637212154492	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.0319140634878892	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: