YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2313876, gi\|1...
Organism:	Helicobacter pylori 26695
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2313876, gi|1....

Description	E-value	Query Range	Subject Range
gi\|15611755, gi\|... - gi\|4155242\|gb\|AAD06263.1\| putative FLAGELLIN PROTEIN [Helicobacter pylori J99], gi\|15611755\|ref\|NP_2... gi\|7465216 - pir\|\|H71900 probable flagellin protein - Helicobacter pylori (strain J99)	135.0	[0..1]	[119..1]
gi\|108563161, gi... - gi\|108563161\|ref\|YP_627477.1\| flagellar protein FlaG [Helicobacter pylori HPAG1], gi\|107836934\|gb\|AB...	132.0	[0..1]	[119..1]
gi\|71736592, gi\|... - gi\|71736592\|ref\|YP_275549.1\| flagellin FlaG [Pseudomonas syringae pv. phaseolicola 1448A], gi\|715571... gi\|38175045 - gi\|38175045\|dbj\|BAD01156.1\| putative flagellin FlaG protein [Pseudomonas syringae pv. glycinea] gi\|49205104 - gi\|49205104\|dbj\|BAD24671.1\| FlaG [Pseudomonas syringae pv. tabaci]	109.0	[0..2]	[118..9]
gi\|63257401, gi\|... - gi\|66046694\|ref\|YP_236535.1\| flagellar protein FlaG protein [Pseudomonas syringae pv. syringae B728a...	108.0	[0..2]	[118..7]
tr\|Q884Y6\|Q884Y6... - Flagellin FlaG, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1950 PE=4 SV=1 gi\|28869154, gi\|... - gi\|28869154\|ref\|NP_791773.1\| flagellin FlaG, putative [Pseudomonas syringae pv. tomato str. DC3000],...	105.0	[0..2]	[118..9]
gi\|196198361, gi... - gi\|196252228\|ref\|ZP_03150889.1\| flagellar protein FlaG protein [Clostridium thermocellum DSM 4150], ... gi\|125974704, gi... - gi\|67875289\|ref\|ZP_00504712.1\| Flagellar protein FlaG protein [Clostridium thermocellum ATCC 27405],...	105.0	[0..1]	[119..13]
gi\|109714463, gi... - gi\|109947242\|ref\|YP_664470.1\| flagellar protein FlaG [Helicobacter acinonychis str. Sheeba], gi\|1097...	105.0	[0..1]	[119..1]
FLAG_VIBPA - Protein FlaG OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=flaG PE=4 SV=2 FLAG_VIBPA - Protein flaG OS=Vibrio parahaemolyticus GN=flaG PE=4 SV=2	104.0	[0..7]	[117..28]
gi\|551514 - gi\|551514\|gb\|AAC27802.1\| FlaG [Vibrio parahaemolyticus] gi\|153837009, gi... - gi\|153837009\|ref\|ZP_01989676.1\| FlaG [Vibrio parahaemolyticus AQ3810], gi\|149749782\|gb\|EDM60527.1\| F...	103.0	[0..7]	[117..28]
gi\|22778188, gi\|... - gi\|23099957\|ref\|NP_693423.1\| flagellar protein FlaG [Oceanobacillus iheyensis HTE831], gi\|22778188\|d...	101.0	[0..5]	[118..9]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNEVQGIGI PTSHTSVQTT PTKEISRTNT INTVDESKTT IDPDQYKPKL ELLSERLNEE  60
   61 MKRIGTDINF SYNDTIKGLV VSVKDANGDK VIREIPSKEA VELMQRMRDV IGIIFDKRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits