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View Structure Prediction Details

Protein: gi|18252231, gi|...
Organism: Arabidopsis thaliana
Length: 708 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18252231, gi|....

Description E-value Query
Range
Subject
Range
PMI1_ARATH - Protein PLASTID MOVEMENT IMPAIRED 1 OS=Arabidopsis thaliana GN=PMI1 PE=1 SV=1
988.0 [0..1] [708..136]
gi|115480581, gi... - gi|215704577|dbj|BAG94210.1| unnamed protein product [Oryza sativa Japonica Group], gi|115480581|ref...
895.0 [0..1] [707..139]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLSCLLSV EVVAAQNLPA SMNGLRLGVC VRKKETKDGA VQTMPCRVSQ GSADFEETLF  60
   61 IKCHVYYSPA NGKGSPAKFE ARPFLFYLFA VDAKELEFGR HVVDLSELIQ ESVEKMNYEG 120
  121 ARVRQWDMNW GLSGKAKGGE LALKLGFQIM EKDGGAGIYS KQGEFGMKPS S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [172-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKNFANSFG RKQSKTSFSV PSPKMTSRSE AWTPASGVES VSDFHGMEHL NLDEPEEKPE  60
   61 EKPVQKNDKP EQRAEDDQEE PDFEVVDKGV EFDDDLETEK SDGTIGERSV EMKEQHVNVD 120
  121 DPRHIMRLTE LDSIAKQIKA LESMMKDESD GGDGETESQR LDEEEQTVTK EFLQLLEDEE 180
  181 TEKLKFYQHK MDISELRSGE SVDDESENYL SDLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [386-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGIGCVVQTR DGGYLVSMNP FDTVVMRKDT PKLVMQISKQ IVVLPEAGPA TGFELFHRMA  60
   61 GSGEELESKI SSLMAIDELM GKTGEQVAFE GIASAIIQGR NKERANTSAA RTVAAVKTMA 120
  121 NAMSSGRRER IMTGIWNVEE NPLTSAEEVL AVSLQKLEEM VVEGLKIQAD MVDDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [561-708]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APFEVSAAKG QKNPLESTIP LEEWQKEHRT QQKLTVLATV QLRDPTRRYE AVGGTVVVAV  60
   61 QAEEEEEKGL KVGSLHIGGV KKDAAEKRRL TAAQWLVEHG MGKKGKKKSN IKKKEKEEEE 120
  121 EEMLWSLSSR VMADMWLKSI RNPDVKLH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle