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View Structure Prediction Details

Protein: KCY_MANSM
Organism: Mannheimia succiniciproducens MBEL55E
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCY_MANSM.

Description E-value Query
Range
Subject
Range
gi|86146933, gi|... - gi|86146933|ref|ZP_01065251.1| cytidylate kinase [Vibrio sp. MED222], gi|85835183|gb|EAQ53323.1| cyt...
KCY_VIBTL - Cytidylate kinase OS=Vibrio tasmaniensis (strain LGP32) GN=cmk PE=3 SV=1
197.0 [0..2] [223..3]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNIVITVD GPSGAGKGTL CYALANRLGF ALLDSGAIYR VTALAALQCK ADLTNEAELA  60
   61 ELAAHLDIEF LPEAGEVKVM LGGEDVSGLI RTQEVADAAS KVAVFPQVRS ALLQLQKDFA 120
  121 TPKGLIADGR DMGTVVFPTA QVKLFLDASA EERAKRRFKQ LQNKGISGNF DQILAEIKDR 180
  181 DFRDRNRPVA PLKPADDALL LDSTTLSIEE VIAQALSYIH QKVKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.09691
Match: 1kdoA
Description: CMP kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleobase, nucleoside, nucleotide kinase activity 3.11888266429063 bayes_pls_golite062009
nucleotide kinase activity 2.48123045432095 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 2.17027410710981 bayes_pls_golite062009
catalytic activity 1.37148167194523 bayes_pls_golite062009
kinase activity 1.24171059767741 bayes_pls_golite062009
binding 0.556857559334679 bayes_pls_golite062009
hydrolase activity 0.310795123901245 bayes_pls_golite062009
adenylate kinase activity 0.03629044845139 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle