YRC Public Data Repository - Protein Structure Prediction

Protein:	RLMH_MANSM
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLMH_MANSM.

Description	E-value	Query Range	Subject Range
gi\|53732589 - gi\|53732589\|ref\|ZP_00154764.2\| COG1576: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|46133667 - gi\|46133667\|ref\|ZP_00157540.2\| COG1576: Uncharacterized conserved protein [Haemophilus influenzae R2... RLMH_HAEIN - Ribosomal RNA large subunit methyltransferase H OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1... gi\|145641826, gi... - gi\|145641826\|ref\|ZP_01797401.1\| hypothetical protein CGSHiR3021_01112 [Haemophilus influenzae R3021]... RLMH_HAEIG - Ribosomal RNA large subunit methyltransferase H OS=Haemophilus influenzae (strain PittGG) GN=rlmH PE... gi\|145641826 - gi\|145641826\|ref\|ZP_01797401.1\| hypothetical protein CGSHiR3021_01112 [Haemophilus influenzae R3021] gi\|145639678, gi... - gi\|145639678\|ref\|ZP_01795281.1\| hypothetical protein CGSHiII_09181 [Haemophilus influenzae PittII], ... gi\|145629110, gi... - gi\|145629110\|ref\|ZP_01784909.1\| hypothetical protein CGSHi22121_09920 [Haemophilus influenzae 22.1-2... Y033_HAEIN, RLMH... - UPF0247 protein HI0033 OS=Haemophilus influenzae GN=HI0033 PE=3 SV=1, Ribosomal RNA large subunit me... gi\|229845379, gi... - gi\|229845379\|ref\|ZP_04465510.1\| hypothetical protein CGSHi6P18H1_00487 [Haemophilus influenzae 6P18H...	251.0	[0..1]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQLIAVGT KMPDWVKVGF EEYQRRFPKD MPFELIEIPA GKRGKNADIK RILEQEGKAM  60
   61 LSACGRGKVV TLDIPGKPWT TDQLARQLES WKNDGRDICL LIGGPEGLSP ECKAAAEQSW 120
  121 SLSPLTLPHP LVRVVVAESV YRAWSLTTNH PYHRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1ns5A
Description:	Hypothetical protein YbeA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.23455016472464	bayes_pls_golite062009
methyltransferase activity	3.59960278169345	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	3.51722801996622	bayes_pls_golite062009
rRNA methyltransferase activity	3.14976989427746	bayes_pls_golite062009
tRNA methyltransferase activity	2.33123191403389	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.23755555119187	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.14623472760939	bayes_pls_golite062009
transferase activity	1.63934797352054	bayes_pls_golite062009
catalytic activity	0.797300463760338	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.319046095835882	bayes_pls_golite062009
binding	0.178115162253014	bayes_pls_golite062009
N-methyltransferase activity	0.118357993944566	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: