YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|53719567, gi|...
Organism: Burkholderia pseudomallei K96243
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|53719567, gi|....

Description E-value Query
Range
Subject
Range
gi|83654950, gi|... - gi|83721125|ref|YP_443123.1| 3-oxoadipate CoA-succinyl transferase alpha subunit [Burkholderia thail...
324.0 [0..1] [234..69]

Back

Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVYPSAAA ALEGVVHDGQ TFAVGGFGLC GIPEALIAAL RDSAVKGITC ISNNAGVDGF  60
   61 GLGLLLETRQ IKKMISSYVG ENKEFERQYL SGELELEFTP QGTLAEKLRA GGAGIPAFFT 120
  121 QTGYGTVIAE GKETREFDGK HYVLEPSLTA DVALVKAWKA DKSGNLVYRR TARNFNPMCA 180
  181 MAGRITIAEV EEIVENGELD PDAIHTPGIF VQRLVLNATP EKRIEQRVVR AKGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.221849
Match: 1m3eA
Description: Succinate:CoA transferase, N-terminal domain; Succinate:CoA transferase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-oxoacid CoA-transferase activity 2.22792536321983 bayes_pls_golite062009
catalytic activity 1.68776709414398 bayes_pls_golite062009
CoA-transferase activity 0.50782945985068 bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups 0.18413827683017 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle