YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51857671, gi\|...
Organism:	Symbiobacterium thermophilum IAM 14863
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51857671, gi|....

Description	E-value	Query Range	Subject Range
YERC_BACSU - Uncharacterized protein yerC OS=Bacillus subtilis GN=yerC PE=4 SV=1 YERC_BACSU - Uncharacterized protein YerC OS=Bacillus subtilis (strain 168) GN=yerC PE=4 SV=1 gi\|221322020 - gi\|221322020\|ref\|ZP_03603314.1\| hypothetical protein BsubsS_03714 [Bacillus subtilis subsp. subtilis... gi\|221317741 - gi\|221317741\|ref\|ZP_03599035.1\| hypothetical protein BsubsJ_03628 [Bacillus subtilis subsp. subtilis... gi\|221312817 - gi\|221312817\|ref\|ZP_03594622.1\| hypothetical protein BsubsN3_03674 [Bacillus subtilis subsp. subtili...	167.0	[0..12]	[108..4]
gi\|27468510, gi\|... - gi\|27468510\|ref\|NP_765147.1\| hypothetical protein SE1592 [Staphylococcus epidermidis ATCC 12228], gi... gi\|57867387, gi\|... - gi\|57867387\|ref\|YP_189014.1\| hypothetical protein SERP1445 [Staphylococcus epidermidis RP62A], gi\|57... gi\|251809889, gi... - gi\|251809889\|ref\|ZP_04824362.1\| sporulation protein YerC [Staphylococcus epidermidis BCM-HMP0060], g...	167.0	[0..12]	[107..4]
gi\|70726045, gi\|... - gi\|70726045\|ref\|YP_252959.1\| hypothetical protein SH1044 [Staphylococcus haemolyticus JCSC1435], gi\|...	166.0	[0..12]	[108..4]
gi\|15927481, gi\|... - gi\|15927481\|ref\|NP_375014.1\| hypothetical protein SA1723 [Staphylococcus aureus subsp. aureus N315],... gi\|49245169, gi\|... - gi\|49486726\|ref\|YP_043947.1\| hypothetical protein SAS1830 [Staphylococcus aureus subsp. aureus MSSA4... gi\|15924897, gi\|... - gi\|15924897\|ref\|NP_372431.1\| hypothetical protein SAV1907 [Staphylococcus aureus subsp. aureus Mu50]... gi\|21283577, gi\|... - gi\|21283577\|ref\|NP_646665.1\| hypothetical protein MW1848 [Staphylococcus aureus subsp. aureus MW2], ... gi\|49484148, gi\|... - gi\|49484148\|ref\|YP_041372.1\| hypothetical protein SAR1999 [Staphylococcus aureus subsp. aureus MRSA2... gi\|25341356 - pir\|\|B89979 conserved hypothetical protein SA1723 [imported] - Staphylococcus aureus (strain N315) gi\|227557552, gi... - gi\|227557552\|ref\|ZP_03987599.1\| sporulation protein YerC [Staphylococcus aureus subsp. aureus MN8], ... gi\|227898001, gi... - gi\|227898001\|ref\|ZP_04015806.1\| sporulation protein YerC [Staphylococcus aureus subsp. aureus TCH60]... gi\|251815036, gi... - gi\|251815036\|ref\|ZP_04829509.1\| sporulation protein YerC [Staphylococcus aureus subsp. aureus TCH70]... gi\|253316916 - gi\|253316916\|ref\|ZP_04840129.1\| hypothetical protein SauraC_12369 [Staphylococcus aureus subsp. aure... gi\|156722358, gi... - gi\|156980223\|ref\|YP_001442482.1\| hypothetical protein SAHV_1892 [Staphylococcus aureus subsp. aureus... gi\|253729685, gi... - gi\|253729685\|ref\|ZP_04863850.1\| sporulation protein YerC [Staphylococcus aureus subsp. aureus USA300... gi\|150374857, gi... - gi\|151222057\|ref\|YP_001332879.1\| hypothetical protein NWMN_1845 [Staphylococcus aureus subsp. aureus... gi\|253727165, gi... - gi\|253734983\|ref\|ZP_04869148.1\| sporulation protein YerC [Staphylococcus aureus subsp. aureus TCH130... gi\|255006694 - gi\|255006694\|ref\|ZP_05145295.2\| hypothetical protein SauraM_09510 [Staphylococcus aureus subsp. aure... gi\|161510130, gi... - gi\|161510130\|ref\|YP_001575789.1\| hypothetical protein USA300HOU_1908 [Staphylococcus aureus subsp. a... gi\|221139065 - gi\|221139065\|ref\|ZP_03563865.1\| hypothetical protein SauraJK_10555 [Staphylococcus aureus subsp. aur... gi\|57650658, gi\|... - gi\|57650658\|ref\|YP_186792.1\| hypothetical protein SACOL1968 [Staphylococcus aureus subsp. aureus COL... gi\|87203364, gi\|... - gi\|88195806\|ref\|YP_500616.1\| hypothetical protein SAOUHSC_02125 [Staphylococcus aureus subsp. aureus... gi\|87161929, gi\|... - gi\|87161929\|ref\|YP_494540.1\| hypothetical protein SAUSA300_1888 [Staphylococcus aureus subsp. aureus... gi\|82657094, gi\|... - gi\|82751563\|ref\|YP_417304.1\| hypothetical protein SAB1842c [Staphylococcus aureus RF122], gi\|8265709... gi\|87127903\|gb\|A... - hypothetical protein SAUSA300_1888 [Staphylococcus aureus subsp. aureus USA300], conserved hypotheti... gi\|148268380, gi... - gi\|90585590\|ref\|ZP_01241298.1\| Trp repressor [Staphylococcus aureus subsp. aureus JH9], gi\|90430710\|... gi\|90583237, gi\|... - gi\|90583237\|ref\|ZP_01238996.1\| Trp repressor [Staphylococcus aureus subsp. aureus JH1], gi\|90427694\|... gi\|221140360 - gi\|221140360\|ref\|ZP_03564853.1\| hypothetical protein SauraJ_01846 [Staphylococcus aureus subsp. aure... gi\|269203560\|ref... - hypothetical protein SAAV_1973 [Staphylococcus aureus subsp. aureus ED98]	166.0	[0..12]	[108..4]
gi\|52079146, gi\|... - gi\|52784513\|ref\|YP_090342.1\| YerC [Bacillus licheniformis ATCC 14580], gi\|52347015\|gb\|AAU39649.1\| Ye...	165.0	[0..12]	[108..4]
gi\|170663373, gi... - gi\|170663373\|gb\|EDT16056.1\| TrpR homolog YerC/YecD [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|110799881, gi... - gi\|110799881\|ref\|YP_697023.1\| TrpR-like protein YerC/YecD [Clostridium perfringens ATCC 13124], gi\|1... gi\|169296687, gi... - gi\|169347004\|ref\|ZP_02865946.1\| TrpR homolog YerC/YecD [Clostridium perfringens C str. JGS1495], gi\|... gi\|182381246, gi... - gi\|182381246\|gb\|EDT78725.1\| TrpR homolog YerC/YecD [Clostridium perfringens NCTC 8239], gi\|168216701... gi\|168213245, gi... - gi\|170715293\|gb\|EDT27475.1\| TrpR homolog YerC/YecD [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168210362, gi... - gi\|170711531\|gb\|EDT23713.1\| TrpR homolog YerC/YecD [Clostridium perfringens B str. ATCC 3626], gi\|16... gi\|177908972, gi... - gi\|182625816\|ref\|ZP_02953583.1\| TrpR homolog YerC/YecD [Clostridium perfringens D str. JGS1721], gi\|... gi\|18311316, gi\|... - gi\|18311316\|ref\|NP_563250.1\| TrpR-like protein YerC/YecD [Clostridium perfringens str. 13], gi\|18145...	165.0	[0..10]	[105..4]
gi\|25341354 - pir\|\|G83729 hypothetical protein BH0639 [imported] - Bacillus halodurans (strain C-125) gi\|10173253, gi\|... - gi\|15613202\|ref\|NP_241505.1\| hypothetical protein BH0639 [Bacillus halodurans C-125], gi\|10173253\|db...	165.0	[0..12]	[108..4]
gi\|56418808, gi\|... - gi\|56418808\|ref\|YP_146126.1\| hypothetical protein GK0273 [Geobacillus kaustophilus HTA426], gi\|56378...	164.0	[0..12]	[102..4]
gi\|73662192, gi\|... - gi\|73662192\|ref\|YP_300973.1\| hypothetical protein SSP0883 [Staphylococcus saprophyticus subsp. sapro...	164.0	[0..12]	[106..4]
gi\|110683853, gi... - gi\|110803352\|ref\|YP_699595.1\| TrpR-like protein YerC/YecD [Clostridium perfringens SM101], gi\|110683...	163.0	[0..10]	[105..4]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGGNPCMPV NEKLRDELTD KLFEAMLTLK TVEEFYRFFE DIATIGEIKA LAQRLEVAKM  60
   61 LDAGMTYEDI VAATGASTAT ISRVKKCLNY GADGYRIVLE RTRNEYKKQG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.64
Match:	3wrpA
Description:	FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits