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View Structure Prediction Details

Protein: gi|46916887, gi|...
Organism: Photobacterium profundum SS9
Length: 269 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46916887, gi|....

Description E-value Query
Range
Subject
Range
gi|90410056, gi|... - gi|90410056|ref|ZP_01218073.1| hypothetical protein P3TCK_04796 [Photobacterium profundum 3TCK], gi|...
195.0 [0..1] [269..1]

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Predicted Domain #1
Region A:
Residues: [1-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKLVALDMD GTLLNSQGKI SEKTKQTIAA AREKGIVVVL ASGRPLEGMT DALNELNMTS  60
   61 NDDYVLCYNG SLVQRVESQS VIRSQLLLGS DAKNIASLSH DFGVHVHGFS RRQGLITPEN 120
  121 NHYTQHEATI NGLAITEIDF AELDNNEEIL KVMMIDEPEL LSKAIAQLPA ALYDQYTIVQ 180
  181 SAPFFLEFMN KNSNKGAGVK ALAEHLGIDA SEVICMGDAG NDHHMLEYAG LGIAMGNATD 240
  241 DTKAIANYIT DSNNDDGVAT AIEKFILNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1rkqA
Description: Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.55296860681783 bayes_pls_golite062009
hydrolase activity 0.82377518695623 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle