YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|46917091, gi|...
Organism: Photobacterium profundum SS9
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46917091, gi|....

Description E-value Query
Range
Subject
Range
gi|46908544, gi|... - gi|46908544|ref|YP_014933.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...
148.0 [0..26] [126..1]

Back

Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLGLYFPP SRQLMLLLKS IWRDEMKKIM LCCSAGMSTS LLVKKMVIEA GKRSLSVEIK  60
   61 AFGASEFDQN VGNYQVVLLG PQVKYMQSDL QKKADAHGIK VEPINMMDYG MQKGDKVLDF 120
  121 ALSLID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1h9cA
Description: Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity 5.08041453921791 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 4.49138214292642 bayes_pls_golite062009
glucoside transmembrane transporter activity 1.83892097143526 bayes_pls_golite062009
sugar transmembrane transporter activity 1.77053981674308 bayes_pls_golite062009
transporter activity 1.6837050020547 bayes_pls_golite062009
transmembrane transporter activity 1.5685227361887 bayes_pls_golite062009
substrate-specific transporter activity 1.32293422112884 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.217268678967 bayes_pls_golite062009
active transmembrane transporter activity 1.12964417923438 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 0.71593290802554 bayes_pls_golite062009
catalytic activity 0.676259875978821 bayes_pls_golite062009
beta-glucoside transmembrane transporter activity 0.50967675887857 bayes_pls_golite062009
binding 0.472595683811139 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.37663629577414 bayes_pls_golite062009
fructose transmembrane transporter activity 0.225562559709031 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.0296784994545702 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle