YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46911761, gi\|...
Organism:	Photobacterium profundum SS9
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46911761, gi|....

Description	E-value	Query Range	Subject Range
gi\|89049722, gi\|... - gi\|89074434\|ref\|ZP_01160911.1\| sec-independent translocase [Photobacterium sp. SKA34], gi\|89049722\|g... gi\|90581031, gi\|... - gi\|90581031\|ref\|ZP_01236831.1\| sec-independent translocase [Vibrio angustum S14], gi\|90437727\|gb\|EAS...	121.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDIGFWELI LISVVGLVVL GPERLPVAIR SVSRWVGAAR NMANSVKDEL SQELKIQELQ  60
   61 ENLKKAEQMG MKDLSPELRE SVEELKQAAS DVQRPYAKKS EPTSTTTSQK QE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.979	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits