YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|54307516, gi|...
Organism: Photobacterium profundum SS9
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54307516, gi|....

Description E-value Query
Range
Subject
Range
gi|7861553 - gi|7861553|dbj|BAA95690.1| phosphoribulokinase [Hydrogenophilus thermoluteolus]
301.0 [0..1] [287..1]

Back

Predicted Domain #1
Region A:
Residues: [1-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKHPIIAV TGSSGAGTTT TSEAFRKMFN MMNINASWLE GDSFHRYTRP EMDVEIRKAK  60
   61 EQGRHISYFG PEANDFPQLE KFFRQYGDDG SGQFRRYLHT FDEAVPYNQM PGSFTPWQKL 120
  121 PENTDVLFYE GLHGGVVDGE VNAAEHVDLL IGMVPIVNLE WIQKIVRDTR DRGHSREAVM 180
  181 ESIVRSMDDY LNYITPQFSR THINFQRVPT VDTSNPFSAK GIPSLDESFV VIRFRGIENV 240
  241 DFPYLLSMIQ GSFMSRHNTL VVPGGKMSFA MELIVRPLIQ QLIDTGKVG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.0
Match: 1a7jA
Description: PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.37148167194523 bayes_pls_golite062009
hydrolase activity 0.310795123901245 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle