YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|54309442, gi|...
Organism: Photobacterium profundum SS9
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54309442, gi|....

Description E-value Query
Range
Subject
Range
gi|90413675, gi|... - gi|90413675|ref|ZP_01221664.1| putative hydroxypyruvate isomerase [Photobacterium profundum 3TCK], g...
250.0 [0..6] [265..1]

Back

Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGSTMPKFA ANLSMLFTEF DFLDRFEIAA DAGFQGVEYL FPYANTPEEI KQRLDNFNLK  60
   61 QVLFNLPAGN WEVGDRGIAV DPTRTDEFRL GVPQAIAYAK ALGCNQVNCL AGIVPAGVSQ 120
  121 EQAIETFVAN LRFAASELEK AGISLVIEAI NTRDIPGFYL TNTSQALDII EQVGSKNLRF 180
  181 QYDIYHMQIM EGDLAPTLSQ HIEHIQHIQL ADNPGRHEPG TGEINYPFIL QHLDNIGYQG 240
  241 WVGCEYKPKT TTLAGIGWLK AFNQI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.69897
Match: 1k77A
Description: Hypothetical protein YgbM (EC1530)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.66019571685402 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle