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View Structure Prediction Details

Protein: gi|46914345, gi|...
Organism: Photobacterium profundum SS9
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46914345, gi|....

Description E-value Query
Range
Subject
Range
gi|90412861, gi|... - gi|90412861|ref|ZP_01220861.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium p...
198.0 [0..1] [246..1]

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Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKGRIHSF ESCGTVDGPG IRFIIFMQGC LMRCQYCHNR DTWDLHDGRE ISVEEIMKEA  60
   61 VSYRHFMKAS GGGVTASGGE AMLQPEFIRD FFRAAQAENI HTCLDTNGYI RKHTDVVDEV 120
  121 LDATDLVMLD LKQMDDTIHQ ELVGVSNKRV LDFARYLHKR GQKTWIRYVI VPGYTDDEQS 180
  181 AHNLGAFIKD MDNIEKIELL PYHQLGEHKW DAMGYDYPLS GVQPPSKETM EKMKEIISSY 240
  241 GHKVIY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.69897
Match: 1r30A
Description: The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle