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View Structure Prediction Details

Protein: gi|46914732, gi|...
Organism: Photobacterium profundum SS9
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46914732, gi|....

Description E-value Query
Range
Subject
Range
gi|90411987, gi|... - gi|90411987|ref|ZP_01219994.1| putative leader peptidase PilD [Photobacterium profundum 3TCK], gi|90...
307.0 [0..1] [299..1]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFTYYPWL FPVFAAIFGL LIGSFLNVVI HRLPIMMERQ WKADCIECFP EFDKENKQEK  60
   61 DNNSVATTPV FNLSVPRSRC PHCQHAITMW ENIPVISWLV LKGKCSACGA KISARYPTIE 120
  121 LLTAVMTTII SLMLP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #2
Region A:
Residues: [136-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSLWAVAVIF FSFALIALTF IDIDTMLLPD QITLPLMWAG IAAALVGLSP VSLQDAIIGA  60
   61 MVGYLSLWSL FWSFKLITGK EGMGYGDFKL LAALGAWLGW QSLPFVVLLS SLVGAVCGII 120
  121 LLRVQRSDSQ TPFSFGPYLA MAGWISILWG DQVISWYLHS YIGM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.075721
Match: PF01478.9
Description: No description for PF01478.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle