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View Structure Prediction Details

Protein: RS6_PHOPR
Organism: Photobacterium profundum SS9
Length: 147 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_PHOPR.

Description E-value Query
Range
Subject
Range
gi|90414464, gi|... - gi|90414464|ref|ZP_01222440.1| 30S ribosomal protein S6 [Photobacterium profundum 3TCK], gi|90324469...
168.0 [0..1] [127..1]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFMV HPDQSEQVAG MIERYTGSIK DSGGQIHRLE DWGRRQMAYP INKLHKAHYV  60
   61 LMNIEAEQSV VDELESTFRF NDAVIRNMIM RAKNAVTEPS PMMKAKEERF TKRDDREERS 120
  121 DRSEAPRAEA PAKAEAPAKA EDEAAAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.30103
Match: 1p6gF
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 3.76170790689216 bayes_pls_golite062009
structural molecule activity 3.47672166437086 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle