YRC Public Data Repository - Protein Structure Prediction

Protein:	RSMG_PHOPR
Organism:	Photobacterium profundum SS9
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSMG_PHOPR.

Description	E-value	Query Range	Subject Range
RSMG_SALPB - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RSMG_SALTY, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium GN=rsmG PE=3 SV=1, Methylt... RSMG_SALCH, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis GN=rsmG PE=3 SV=1, Methyl... RSMG_SALTI, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhi GN=rsmG PE=3 SV=1, Methyltransfe... GIDB_SALPA, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A GN=rsmG PE=3 SV=1, Methylt... RSMG_SALHS - Ribosomal RNA small subunit methyltransferase G OS=Salmonella heidelberg (strain SL476) GN=rsmG PE=3... RSMG_SALNS - Ribosomal RNA small subunit methyltransferase G OS=Salmonella newport (strain SL254) GN=rsmG PE=3 SV... RSMG_SALPK - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A (strain AKU_12601) GN=rsmG... gi\|197240084, gi... - gi\|197261829\|ref\|ZP_03161903.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica... gi\|205327328, gi... - gi\|205327328\|gb\|EDZ14092.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... gi\|168823140, gi... - gi\|205340562\|gb\|EDZ27326.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... gi\|168245183, gi... - gi\|205336052\|gb\|EDZ22816.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... RSMG_SALTI - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhi GN=rsmG PE=3 SV=1 gi\|16762453 - gi\|16762453\|ref\|NP_458070.1\| glucose-inhibited division protein B [Salmonella enterica subsp. enteri... RSMG_SALTY - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|29139577, gi\|... - gi\|29143941\|ref\|NP_807283.1\| glucose-inhibited division protein B [Salmonella enterica subsp. enteri... gi\|213850448 - gi\|213850448\|ref\|ZP_03381346.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... RSMG_SALPB - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RSMG_SALCH - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis GN=rsmG PE=3 SV=1 gi\|199605859, gi... - gi\|200388761\|ref\|ZP_03215373.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica... RSMG_SALTY - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium GN=rsmG PE=3 SV=1 RSMG_SALDC - Ribosomal RNA small subunit methyltransferase G OS=Salmonella dublin (strain CT_02021853) GN=rsmG PE... RSMG_SALCH - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis (strain SC-B67) GN=rsmG P... gi\|213649866 - gi\|213649866\|ref\|ZP_03379919.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... RSMG_SALPA - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... gi\|213052662 - gi\|213052662\|ref\|ZP_03345540.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent...	158.0	[0..1]	[206..1]

Back

Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRLVQLIA QTELQVTEQQ VQQLVGYVEL LHKWNKAYNL TSVRDPNEML VKHIMDSIVV  60
   61 SAHLQGENFI DVGTGPGLPG IPLAIMCPEK NFTLLDSLGK RIRFIKQVVH ELKIANVTPV 120
  121 QSRVEEFQPE QGFDGVISRA FASMNDMVSW CHHLPAENGH FLALKGQFSE QEVAELPEWC 180
  181 SVTEVKPLQI PELEGKRHLV ILTAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1jsxA
Description:	Glucose-inhibited division protein B (GidB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: