YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|G3HIG8\|G3HIG8...
Organism:	Cricetulus griseus
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|G3HIG8|G3HIG8....

Description	E-value	Query Range	Subject Range
gi\|57108075 - gi\|57108075\|ref\|XP_535416.1\| PREDICTED: similar to CG11137-PA [Canis familiaris]	324.0	[0..1]	[183..1]
gi\|12834476 - gi\|12834476\|dbj\|BAB22926.1\| unnamed protein product [Mus musculus]	312.0	[0..1]	[183..1]
gi\|90077506 - gi\|90077506\|dbj\|BAE88433.1\| unnamed protein product [Macaca fascicularis] TMEM85 - transmembrane protein 85 TMM85_PONPY - Transmembrane protein 85 - Pongo pygmaeus (Orangutan) gi\|109080509 - gi\|109080509\|ref\|XP_001087244.1\| PREDICTED: similar to CG11137-PA isoform 2 [Macaca mulatta] EMC4_PONAB - ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2 SV=1 ENSCJAT00000041516 - null	311.0	[0..1]	[183..1]
EMC4_BOVIN - ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2 SV=1 gi\|149692100 - gi\|149692100\|ref\|XP_001503724.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-... gi\|194039184, gi... - gi\|194039200\|ref\|XP_001927127.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-...	308.0	[0..1]	[183..1]
gi\|109468547 - gi\|109468547\|ref\|XP_215797.4\| PREDICTED: similar to CG11137-PA [Rattus norvegicus]	307.0	[0..1]	[183..1]
gi\|114656164 - gi\|114656164\|ref\|XP_510280.2\| PREDICTED: similar to TMEM85 protein isoform 3 [Pan troglodytes]	299.0	[0..1]	[183..1]
EMC4_XENTR - ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1	289.0	[0..1]	[183..1]
EMC4_XENLA - ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1	287.0	[0..1]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQGGLVAN RGRRFKWAIE LSGPGGGSRG RSDRGSGQGD SLYPVGYLDK QVPDTSVQET  60
   61 DRILVEKRCW DIALGPLKQI PMNLFIMYMA GNTISIFPTM MVCMMAWRPI QALMAISATF 120
  121 KMLESSSQKF LQGLVYLIGN LMGLALAVYK CQSMGLLPTH ASDWLAFIEP PERMEFSGGG 180
  181 LLL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.060481
Match:	PF06417.3
Description:	No description for PF06417.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits