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View Structure Prediction Details

Protein: tr|G3I9S4|G3I9S4...
Organism: Cricetulus griseus
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|G3I9S4|G3I9S4....

Description E-value Query
Range
Subject
Range
MED22_RAT - Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1
211.0 [0..1] [126..1]
MED22_BOVIN - Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1
210.0 [0..1] [126..1]
MED22_MOUSE - Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus GN=Med22 PE=1 SV=2
210.0 [0..1] [126..1]
gi|31652218, gi|... - gi|5803183|ref|NP_006743.1| surfeit 5 isoform a [Homo sapiens], gi|55958178|emb|CAI12828.1| surfeit ...
gi|60822577 - gi|60822577|gb|AAX36614.1| surfeit 5 [synthetic construct]
210.0 [0..1] [140..1]
ENSCJAT00000035050 - null
gi|109109904 - gi|109109904|ref|XP_001101486.1| PREDICTED: similar to Surfeit locus protein 5 isoform 2 [Macaca mul...
gi|55632551 - gi|55632551|ref|XP_528453.1| PREDICTED: similar to SURF-5 protein [Pan troglodytes]
209.0 [0..1] [140..1]
gi|114627378 - gi|114627378|ref|XP_528453.2| PREDICTED: surfeit 5 [Pan troglodytes]
209.0 [0..1] [126..1]
gi|73967578 - gi|73967578|ref|XP_537799.2| PREDICTED: similar to Surfeit locus protein 5 isoform 1 [Canis familiar...
208.0 [0..1] [140..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQRALPQS KETLLQSYNK RLKDDIKSIM DNFTEIIKTA KIEDETQVSR ATQGEQDNYE  60
   61 MHVRAANIVR AGESLMKLVS DLKQFLILND FPSVNEAIDQ RNQQLRALQE ECDRKLITLR 120
  121 DEVSIDLYEL EEEYYSSRYK 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 89.0
Match: PF06179.3
Description: No description for PF06179.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.984 N/A N/A a.47.1 STAT
View Download 0.978 N/A N/A a.7.1 Spectrin repeat
View Download 0.976 N/A N/A a.7.1 Spectrin repeat
View Download 0.976 N/A N/A a.7.1 Spectrin repeat
View Download 0.965 N/A N/A a.7.8 GAT domain
View Download 0.950 N/A N/A a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.921 N/A N/A a.24.1 Apolipoprotein
View Download 0.913 N/A N/A a.24.1 Apolipoprotein
View Download 0.908 N/A N/A a.7.1 Spectrin repeat
View Download 0.898 N/A N/A a.7.1 Spectrin repeat


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle