YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17934683, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17934683, gi|....

Description	E-value	Query Range	Subject Range
gi\|15073842 - gi\|15073842\|emb\|CAC45483.1\| Probable Surf [Sinorhizobium meliloti 1021] gi\|15964664 - gi\|15964664\|ref\|NP_385017.1\| putative cytochrome oxidase complex biogenesis factor transmembrane pro...	270.0	[0..15]	[254..1]
gi\|225626979, gi... - gi\|225626979\|ref\|ZP_03785018.1\| Surfeit locus protein 1 [Brucella ceti str. Cudo], gi\|225618636\|gb\|E... gi\|25349736 - pir\|\|AF3434 surfeit locus protein 1 [imported] - Brucella melitensis (strain 16M) gi\|254709618 - gi\|254709618\|ref\|ZP_05171429.1\| Surfeit locus protein 1 [Brucella pinnipedialis B2/94] gi\|254712966 - gi\|254712966\|ref\|ZP_05174777.1\| Surfeit locus protein 1 [Brucella ceti M644/93/1] gi\|23501375, gi\|... - gi\|23501375\|ref\|NP_697502.1\| SurF1 family protein [Brucella suis 1330], gi\|23347270\|gb\|AAN29417.1\| S... gi\|254701276 - gi\|254701276\|ref\|ZP_05163104.1\| Surfeit locus protein 1 [Brucella suis bv. 5 str. 513] gi\|17987743, gi\|... - gi\|17987743\|ref\|NP_540377.1\| surfeit locus protein 1 [Brucella melitensis 16M], gi\|17983464\|gb\|AAL52... gi\|254703823 - gi\|254703823\|ref\|ZP_05165651.1\| Surfeit locus protein 1 [Brucella suis bv. 3 str. 686] gi\|254716680 - gi\|254716680\|ref\|ZP_05178491.1\| Surfeit locus protein 1 [Brucella ceti M13/05/1] gi\|163673478, gi... - gi\|163842755\|ref\|YP_001627159.1\| Surfeit locus protein 1 [Brucella suis ATCC 23445], gi\|163673478\|gb...	267.0	[0..12]	[257..1]
gi\|45915456, gi\|... - gi\|69278261\|ref\|ZP_00613472.1\| Surfeit locus 1 [Mesorhizobium sp. BNC1], gi\|68191234\|gb\|EAN05891.1\| ...	264.0	[0..19]	[258..9]
gi\|254729799 - gi\|254729799\|ref\|ZP_05188377.1\| Surf1 protein [Brucella abortus bv. 4 str. 292] gi\|254688766 - gi\|254688766\|ref\|ZP_05152020.1\| Surf1 protein [Brucella abortus bv. 6 str. 870] gi\|254696895 - gi\|254696895\|ref\|ZP_05158723.1\| Surf1 protein [Brucella abortus bv. 2 str. 86/8/59] gi\|82615482 - gi\|82615482\|emb\|CAJ10456.1\| Surf1 protein [Brucella melitensis biovar Abortus 2308] gi\|82699381 - gi\|82699381\|ref\|YP_413955.1\| Surf1 protein [Brucella melitensis biovar Abortus 2308] gi\|62195587, gi\|... - gi\|62289455\|ref\|YP_221248.1\| SurF1 family protein [Brucella abortus bv. 1 str. 9-941], gi\|62195587\|g... gi\|237789779, gi... - gi\|237814942\|ref\|ZP_04593940.1\| Surfeit locus protein 1 [Brucella abortus str. 2308 A], gi\|237789779... gi\|189023704, gi... - gi\|189023704\|ref\|YP_001934472.1\| Surf1 protein [Brucella abortus S19], gi\|189019276\|gb\|ACD71998.1\| S...	262.0	[0..12]	[257..1]
gi\|115255450, gi... - gi\|116250802\|ref\|YP_766640.1\| putative transmembrane cytochrome oxidase biogenesis protein [Rhizobiu...	255.0	[0..10]	[255..2]
gi\|30851526 - gi\|30851526\|gb\|AAH52500.1\| Surf1 protein [Mus musculus]	245.0	[0..24]	[252..25]
gi\|15155016, gi\|... - gi\|15887493\|ref\|NP_353174.1\| hypothetical protein AGR_C_221 [Agrobacterium tumefaciens str. C58], gi... gi\|25349738 - pir\|\|F97375 surfeit 1 (AF182952) [imported] - Agrobacterium tumefaciens (strain C58, Cereon)	244.0	[0..11]	[255..38]
gi\|150027265, gi... - gi\|150395750\|ref\|YP_001326217.1\| Surfeit locus 1 family protein [Sinorhizobium medicae WSM419], gi\|1...	244.0	[0..41]	[254..34]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	244.0	[0..24]	[252..495]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAKAGLIVN DVSHMKAAQR RVWFAAPLVL LALAILLGLG TWQVKRLYWK EALMADIEER  60
   61 RNASPATLSD IEAIVKSGGE IEYRKVRLSG TFDHTRERHF FATHQGQTGY YIYTPLTLAD 120
  121 GRILFVNRGF VPFEMKEAAK RPDGQVSGEV TITGLARAPL VAKPSSLLPD NDIAKNIFYW 180
  181 KDLAAMASSA EVPPERLVKL FVDADNAPNP GGWPQGGVTL IDLPNNHLQY AITWYGLAAA 240
  241 LVIVAGFAYF RNGKAQGE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits