YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25302988, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25302988, gi|....

Description	E-value	Query Range	Subject Range
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	247.0	[0..8]	[134..3]
gi\|110633220, gi... - gi\|69279604\|ref\|ZP_00614410.1\| Protein of unknown function DUF25 [Mesorhizobium sp. BNC1], gi\|681898...	242.0	[0..1]	[133..2]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	240.0	[0..1]	[134..32]
gi\|15964744 - gi\|15964744\|ref\|NP_385097.1\| hypothetical protein SMc00117 [Sinorhizobium meliloti 1021] gi\|15073922 - gi\|15073922\|emb\|CAC45563.1\| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]	240.0	[0..1]	[133..19]
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	240.0	[0..10]	[132..67]
gi\|108764748, gi... - gi\|68562385\|ref\|ZP_00601648.1\| Protein of unknown function DUF25 [Rubrobacter xylanophilus DSM 9941]...	239.0	[0..5]	[134..4]
gi\|87137021, gi\|... - gi\|87201340\|ref\|YP_498597.1\| protein-methionine-S-oxide reductase [Novosphingobium aromaticivorans D...	238.0	[0..1]	[134..1]
MSRB1_RHIME - Peptide methionine sulfoxide reductase MsrB 1 OS=Rhizobium meliloti (strain 1021) GN=msrB1 PE=3 SV=2 MSRB1_RHIME, MSB... - Peptide methionine sulfoxide reductase msrB 1 OS=Rhizobium meliloti GN=msrB1 PE=3 SV=2, (Q92RA4) Pep...	238.0	[0..1]	[133..1]
gi\|116699061, gi... - gi\|71544925\|ref\|ZP_00665902.1\| Protein of unknown function DUF25 [Syntrophobacter fumaroxidans MPOB]...	237.0	[0..2]	[133..50]
MSRB_HAHCH - Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV...	237.0	[0..6]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLTSPKVN KSDADWREQL TPEQYHILRE HGTERPFTGP YWNSTEKGLY RCAACDEPLF  60
   61 LSDTKFDAGC GWPSYFEPVK PGAVTEHRDS THGMVRTEIR CANCGGHLGH VFPDGPPPTG 120
  121 LRYCINGHSM VFEPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: