YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15888277, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15888277, gi|....

Description	E-value	Query Range	Subject Range
gi\|68348510, gi\|... - gi\|70734211\|ref\|YP_257851.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas fluorescens Pf-...	136.0	[0..1]	[133..1]
HMRR_SINMW - HTH-type transcriptional regulator HmrR OS=Sinorhizobium medicae (strain WSM419) GN=hmrR PE=1 SV=1 HMRR_RHIME - HTH-type transcriptional regulator hmrR - Rhizobium meliloti (Sinorhizobium meliloti)	135.0	[0..1]	[133..1]
gi\|17430370 - gi\|17430370\|emb\|CAD17135.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17548064 - gi\|17548064\|ref\|NP_521466.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	134.0	[0..2]	[137..16]
HMRR2_RHIME, HMR... - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti GN=hmrR2 PE=3 SV=1, (P58379) H... HMRR2_RHIME - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti (strain 1021) GN=hmrR2 PE=3 SV...	134.0	[0..1]	[131..1]
tr\|Q889K0\|Q889K0... - Transcriptional regulator, heavy metal-dependent OS=Pseudomonas syringae pv. tomato (strain DC3000) ... gi\|28851213, gi\|... - gi\|28867977\|ref\|NP_790596.1\| transcriptional regulator, heavy metal-dependent [Pseudomonas syringae ...	132.0	[0..1]	[133..1]
gi\|82736997, gi\|... - gi\|82736997\|ref\|ZP_00899851.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas putida F1], g... gi\|24981972, gi\|... - gi\|26987323\|ref\|NP_742748.1\| MerR family transcriptional regulator [Pseudomonas putida KT2440], gi\|2... tr\|I7BDC5\|I7BDC5... - MerR family transcriptional regulator OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3756 PE=4 SV=1	131.0	[0..1]	[140..1]
gi\|71733260, gi\|... - gi\|71733260\|ref\|YP_276749.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas syringae pv. ph...	131.0	[0..1]	[129..1]
gi\|126223005, gi... - gi\|126443514\|ref\|YP_001061596.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomall... gi\|157806622, gi... - gi\|254296837\|ref\|ZP_04964291.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|169657072, gi... - gi\|254198900\|ref\|ZP_04905318.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|254185283, gi... - gi\|254185283\|ref\|ZP_04891871.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167921652 - gi\|167921652\|ref\|ZP_02508743.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167913710 - gi\|167913710\|ref\|ZP_02500801.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167905418 - gi\|167905418\|ref\|ZP_02492623.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|76819060, gi\|... - gi\|76819060\|ref\|YP_337065.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomallei 1... gi\|167897034 - gi\|167897034\|ref\|ZP_02484436.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167848482 - gi\|167848482\|ref\|ZP_02473990.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167826967 - gi\|167826967\|ref\|ZP_02458438.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|167722425 - gi\|167722425\|ref\|ZP_02405661.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|254213664, gi... - gi\|254262662\|ref\|ZP_04953527.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle... gi\|161358674 - gi\|161358674\|ref\|ZP_02104546.1\| Cu(I)-responsive transcriptional regulator [Burkholderia pseudomalle...	131.0	[0..1]	[129..1]
gi\|22003414 - gi\|22003414\|gb\|AAM88669.1\|AF390440_5 transcriptional regulator [Pseudomonas putida]	130.0	[0..1]	[137..1]
gi\|78047891, gi\|... - gi\|78047891\|ref\|YP_364066.1\| MerR family transcriptional regulator [Xanthomonas campestris pv. vesic... gi\|120605850, gi... - gi\|121593770\|ref\|YP_985666.1\| MerR family transcriptional regulator [Acidovorax sp. JS42], gi\|120605...	130.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIGQASEAS GVSAKMIRYY EQIGLITPAA RTGNNYRVYG EQDVHNLRFI KRARTLGFSL  60
   61 EETETLLKLW QDKSRESSAV KEIALVHIAD LEQKIAEMKS MVKTLSHLAH CCGGDHRPDC 120
  121 PILDDLAGAD KTDGKPARTH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.93045200338189	bayes_pls_golite062009
DNA binding	2.76021735963177	bayes_pls_golite062009
nucleic acid binding	2.74030354422037	bayes_pls_golite062009
transcription factor activity	2.40971210693942	bayes_pls_golite062009
binding	2.02368770517087	bayes_pls_golite062009
transcription activator activity	0.653537232350623	bayes_pls_golite062009
protein binding	0.539362924655427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: