YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25520984, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25520984, gi|....

Description	E-value	Query Range	Subject Range
gi\|14027233, gi\|... - gi\|14027233\|dbj\|BAB54187.1\| mlr7801 [Mesorhizobium loti MAFF303099], gi\|13476472\|ref\|NP_108042.1\| hy...	194.0	[0..2]	[157..7]
gi\|110633322, gi... - gi\|69279706\|ref\|ZP_00614512.1\| Glutathione-dependent formaldehyde-activating, GFA [Mesorhizobium sp....	189.0	[0..2]	[154..7]
gi\|150027453, gi... - gi\|150395938\|ref\|YP_001326405.1\| glutathione-dependent formaldehyde-activating GFA [Sinorhizobium me...	189.0	[0..3]	[157..5]
gi\|15074044 - gi\|15074044\|emb\|CAC45691.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964865 - gi\|15964865\|ref\|NP_385218.1\| hypothetical protein SMc02550 [Sinorhizobium meliloti 1021]	189.0	[0..5]	[157..7]
gi\|86281163, gi\|... - gi\|86357061\|ref\|YP_468953.1\| hypothetical protein RHE_CH01423 [Rhizobium etli CFN 42], gi\|86281163\|g...	181.0	[0..3]	[157..4]
gi\|78047164, gi\|... - gi\|78047164\|ref\|YP_363339.1\| hypothetical protein XCV1608 [Xanthomonas campestris pv. vesicatoria st...	179.0	[0..4]	[153..7]
gi\|116251308, gi... - gi\|116251308\|ref\|YP_767146.1\| hypothetical protein RL1542 [Rhizobium leguminosarum bv. viciae 3841],...	178.0	[0..1]	[156..1]
gi\|21107750, gi\|... - gi\|21242318\|ref\|NP_641900.1\| hypothetical protein XAC1568 [Xanthomonas axonopodis pv. citri str. 306...	176.0	[0..4]	[153..7]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTHTGGCQC GAVRFRATGD LQDSSICHCR MCQKAFGAYY APLVSVRNVE FEWTRGEPKR  60
   61 FQSSSVVKRG FCPECGTPLT YEAPDGVAVA AGAFDDPAAL PPTIQWGVER KIDFVDTLHT 120
  121 LPAVATEDDL TQVDYLTNLV SYQHPDHDTE NWPPEKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1x6mA
Description:	Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits