YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15888477, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15888477, gi|....

Description	E-value	Query Range	Subject Range
gi\|88795665, gi\|... - gi\|88795665\|ref\|ZP_01111358.1\| phosphoribosylglycinamide formyltransferase [Alteromonas macleodii 'D...	237.0	[0..6]	[218..1]
gi\|85694914, gi\|... - gi\|85711413\|ref\|ZP_01042472.1\| Folate-dependent phosphoribosylglycinamide formyltransferase [Idiomar...	230.0	[0..11]	[219..2]
gi\|15075961 - gi\|15075961\|emb\|CAC47515.1\| Putative formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021... gi\|15966689 - gi\|15966689\|ref\|NP_387042.1\| formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021]	228.0	[0..1]	[219..76]
gi\|114767063, gi... - gi\|114767063\|ref\|ZP_01445960.1\| formyltetrahydrofolate deformylase protein [Roseovarius sp. HTCC2601...	227.0	[0..3]	[219..78]
gi\|89080493, gi\|... - gi\|89095239\|ref\|ZP_01168161.1\| phosphoribosylglycinamide formyltransferase [Oceanospirillum sp. MED9...	225.0	[0..9]	[206..1]
gi\|77958968 - gi\|77958968\|ref\|ZP_00822993.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	225.0	[0..9]	[206..1]
gi\|46849407 - gi\|46849407\|dbj\|BAD17913.1\| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synt...	225.0	[0..1]	[208..796]
gi\|77960046, gi\|... - gi\|77960046\|ref\|ZP_00823945.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	225.0	[0..11]	[206..2]
gi\|56460763, gi\|... - gi\|56460763\|ref\|YP_156044.1\| phosphoribosylglycinamide formyltransferase [Idiomarina loihiensis L2TR...	225.0	[0..11]	[206..2]
gi\|72162755, gi\|... - gi\|72162755\|ref\|YP_290412.1\| formyltetrahydrofolate deformylase [Thermobifida fusca YX], gi\|71916487...	225.0	[0..7]	[209..85]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSAALSSGR KRVVVFISGG GSNMVSLAKA CQAADFPAEI ACVISDKASA GGLEKARDLG  60
   61 IPTLVFERKT YASKAEHEGA ILAALGEIAP DIICLAGYMR LISGDFIAPY EGRIINIHPS 120
  121 LLPLFPGLHT HQRAIDSGMK ISGCTVHFVT EGMDEGPTIA QGAVPVLSGD TAETLAARIL 180
  181 TVEHQLYPLT LKRLAEGKVR MEDGKAVSTD NESKSEYSSL ISAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.221849
Match:	1c3eA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.09881190860822	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01667310557403	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	3.81159871979977	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.49010887242285	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	2.94311083909314	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	2.39150724300118	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
binding	1.1813924954238	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
ligase activity	0.922788719307786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: