YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25286523
Organism:	Agrobacterium tumefaciens
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25286523.

Description	E-value	Query Range	Subject Range
gi\|17935469, gi\|... - gi\|17935469\|ref\|NP_532259.1\| serine acetyltransferase [Agrobacterium tumefaciens str. C58], gi\|17740... gi\|25286524 - pir\|\|AI2769 serine acetyltransferase cysE [imported] - Agrobacterium tumefaciens (strain C58, Dupont...	245.0	[0..7]	[287..1]
gi\|15074416 - gi\|15074416\|emb\|CAC46062.1\| Probable serine acetyltransferase [Sinorhizobium meliloti 1021] gi\|15965236 - gi\|15965236\|ref\|NP_385589.1\| serine acetyltransferase protein [Sinorhizobium meliloti 1021]	236.0	[0..14]	[283..1]
gi\|113872894, gi... - gi\|150396332\|ref\|YP_001326799.1\| serine O-acetyltransferase [Sinorhizobium medicae WSM419], gi\|15002...	234.0	[0..14]	[283..1]
gi\|17987017, gi\|... - gi\|17987017\|ref\|NP_539651.1\| serine acetyltransferase [Brucella melitensis 16M], gi\|17982670\|gb\|AAL5... gi\|25286525 - pir\|\|AH3343 serine O-acetyltransferase (EC 2.3.1.30) [imported] - Brucella melitensis (strain 16M)	233.0	[0..3]	[287..12]
gi\|197940671, gi... - gi\|198246155\|ref\|YP_002217661.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|199604096, gi... - gi\|200386998\|ref\|ZP_03213610.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica sero... gi\|204928531, gi... - gi\|204928531\|ref\|ZP_03219730.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica sero... gi\|205354698, gi... - gi\|205354698\|ref\|YP_002228499.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serov... gi\|205338723, gi... - gi\|205338723\|gb\|EDZ25487.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... gi\|194406093, gi... - gi\|194447789\|ref\|YP_002047730.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serov... gi\|194737807, gi... - gi\|194737807\|ref\|YP_002116634.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|197215088, gi... - gi\|197251385\|ref\|YP_002148632.1\| serine acetyltransferase 4 [Salmonella enterica subsp. enterica ser... gi\|161366141, gi... - gi\|161616777\|ref\|YP_001590742.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serov... gi\|168235303, gi... - gi\|197291620\|gb\|EDY30972.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... gi\|29144100, gi\|... - gi\|29144100\|ref\|NP_807442.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serovar T... gi\|16762611 - gi\|16762611\|ref\|NP_458228.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serovar T... gi\|16504916, gi\|... - gi\|25286521\|pir\|\|AC0975 serine O-acetyltransferase (EC 2.3.1.30) - Salmonella enterica subsp. enteri... gi\|238910266 - gi\|238910266\|ref\|ZP_04654103.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213852186 - gi\|213852186\|ref\|ZP_03381718.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213999713 - gi\|213999713\|ref\|ZP_03410448.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|206710739, gi... - gi\|207858936\|ref\|YP_002245587.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serov... gi\|213163821 - gi\|213163821\|ref\|ZP_03349531.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213427156 - gi\|213427156\|ref\|ZP_03359906.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213647898 - gi\|213647898\|ref\|ZP_03377951.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serova...	232.0	[0..27]	[284..4]
gi\|194420480, gi... - gi\|83571400\|ref\|ZP_00922840.1\| COG1045: Serine acetyltransferase [Shigella dysenteriae 1012], gi\|194...	231.0	[0..27]	[284..4]
gi\|82779100, gi\|... - gi\|82779100\|ref\|YP_405449.1\| serine acetyltransferase [Shigella dysenteriae Sd197], gi\|81243248\|gb\|A...	231.0	[0..27]	[284..4]
gi\|115515009, gi... - gi\|117625885\|ref\|YP_859208.1\| serine acetyltransferase [Escherichia coli APEC O1], gi\|115515009\|gb\|A... gi\|124499159, gi... - gi\|124530518\|ref\|ZP_01701145.1\| serine O-acetyltransferase [Escherichia coli B], gi\|124499159\|gb\|EAY... gi\|91074695, gi\|... - gi\|91213121\|ref\|YP_543107.1\| serine acetyltransferase [Escherichia coli UTI89], gi\|91074695\|gb\|ABE09... gi\|15833739, gi\|... - gi\|15833739\|ref\|NP_312512.1\| serine acetyltransferase [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|110345443, gi... - gi\|110643851\|ref\|YP_671581.1\| serine acetyltransferase [Escherichia coli 536], gi\|110345443\|gb\|ABG71... gi\|110807717, gi... - gi\|110807717\|ref\|YP_691237.1\| serine acetyltransferase [Shigella flexneri 5 str. 8401], gi\|110617265... gi\|81247386, gi\|... - gi\|82545975\|ref\|YP_409922.1\| serine acetyltransferase [Shigella boydii Sb227], gi\|81247386\|gb\|ABB680... CYSE_SHIFL - Serine acetyltransferase OS=Shigella flexneri GN=cysE PE=3 SV=1 gi\|85676435, gi\|... - gi\|89110404\|ref\|AP_004184.1\| serine acetyltransferase [Escherichia coli str. K-12 substr. W3110], gi... gi\|24054115, gi\|... - gi\|24114876\|ref\|NP_709386.1\| serine acetyltransferase [Shigella flexneri 2a str. 301], gi\|24054115\|g... gi\|188487171, gi... - gi\|75514324\|ref\|ZP_00736632.1\| COG1045: Serine acetyltransferase [Escherichia coli 53638], gi\|188491... CYSE_ECOL6 - Serine acetyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cysE PE=3... gi\|73857633, gi\|... - gi\|74314156\|ref\|YP_312575.1\| serine acetyltransferase [Shigella sonnei Ss046], gi\|73857633\|gb\|AAZ903... gi\|30043378, gi\|... - gi\|30065117\|ref\|NP_839288.1\| serine acetyltransferase [Shigella flexneri 2a str. 2457T], gi\|30043378... CYSE_ECO57 - Serine acetyltransferase OS=Escherichia coli O157:H7 GN=cysE PE=3 SV=1 EG10187 - serine acetyltransferase / Serine acetyltransferase (SAT); first step in cysteine synthesis; feedbac... gi\|12518357, gi\|... - gi\|15804151\|ref\|NP_290190.1\| serine acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|12518357... gi\|157163091, gi... - gi\|75197516\|ref\|ZP_00707586.1\| COG1045: Serine acetyltransferase [Escherichia coli HS], gi\|157163091... gi\|75211364, gi\|... - gi\|75211364\|ref\|ZP_00711463.1\| COG1045: Serine acetyltransferase [Escherichia coli B171], gi\|1944274... gi\|187733263, gi... - gi\|75179753\|ref\|ZP_00699740.1\| COG1045: Serine acetyltransferase [Shigella boydii BS512], gi\|1877332... gi\|75188372, gi\|... - gi\|75188372\|ref\|ZP_00701639.1\| COG1045: Serine acetyltransferase [Escherichia coli E24377A], gi\|1571... gi\|190909156, gi... - gi\|75242607\|ref\|ZP_00726351.1\| COG1045: Serine acetyltransferase [Escherichia coli F11], gi\|19117034... gi\|192926249, gi... - gi\|75255825\|ref\|ZP_00727571.1\| COG1045: Serine acetyltransferase [Escherichia coli E22], gi\|19306608... gi\|75228672, gi\|... - gi\|75228672\|ref\|ZP_00715293.1\| COG1045: Serine acetyltransferase [Escherichia coli B7A], gi\|19116813... gi\|193068561, gi... - gi\|75237549\|ref\|ZP_00721582.1\| COG1045: Serine acetyltransferase [Escherichia coli E110019], gi\|1930... gi\|194435883, gi... - gi\|83588539\|ref\|ZP_00927163.1\| COG1045: Serine acetyltransferase [Escherichia coli 101-1], gi\|194435... CYSE_ECOL6 - Serine acetyltransferase OS=Escherichia coli O6 GN=cysE PE=3 SV=1 gi\|218691894, gi... - gi\|218691894\|ref\|YP_002400106.1\| serine acetyltransferase [Escherichia coli ED1a], gi\|218429458\|emb\|... gi\|218354063, gi... - gi\|218697331\|ref\|YP_002404998.1\| serine acetyltransferase [Escherichia coli 55989], gi\|218354063\|emb... gi\|218372362, gi... - gi\|218702376\|ref\|YP_002410005.1\| serine acetyltransferase [Escherichia coli IAI39], gi\|218372362\|emb... gi\|218707244, gi... - gi\|218707244\|ref\|YP_002414763.1\| serine acetyltransferase [Escherichia coli UMN026], gi\|218434341\|em... gi\|254795565, gi... - gi\|254795565\|ref\|YP_003080402.1\| serine acetyltransferase [Escherichia coli O157:H7 str. TW14359], g... gi\|254163537, gi... - gi\|254163537\|ref\|YP_003046645.1\| serine acetyltransferase [Escherichia coli B str. REL606], gi\|25397... gi\|254038807, gi... - gi\|254038807\|ref\|ZP_04872859.1\| serine acetyltransferase [Escherichia sp. 1_1_43], gi\|226838772\|gb\|E... gi\|253322594, gi... - gi\|254290287\|ref\|YP_003056035.1\| serine acetyltransferase [Escherichia coli BL21(DE3)], gi\|253979594... gi\|242379131, gi... - gi\|251786858\|ref\|YP_003001162.1\| hypothetical protein B21_03416 [Escherichia coli BL21], gi\|24237913... gi\|238863538, gi... - gi\|238902698\|ref\|YP_002928494.1\| serine acetyltransferase [Escherichia coli BW2952], gi\|238863538\|gb... gi\|237703378, gi... - gi\|237703378\|ref\|ZP_04533859.1\| serine acetyltransferase [Escherichia sp. 3_2_53FAA], gi\|226902642\|g... gi\|227883777, gi... - gi\|227883777\|ref\|ZP_04001582.1\| serine acetyltransferase [Escherichia coli 83972], gi\|227839055\|gb\|E... CYSE_ECOLI - Serine acetyltransferase (EC 2.3.1.30) (SAT) - Escherichia coli EG10187 - serine acetyltransferase / Serine acetyltransferase (SAT); first step in cysteine synthesis; feedbac... gi\|168746843, gi... - gi\|188018350\|gb\|EDU56472.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|189359015, gi... - gi\|189359015\|gb\|EDU77434.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|189369917, gi... - gi\|189369917\|gb\|EDU88333.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|189364473, gi... - gi\|189364473\|gb\|EDU82892.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|187771772, gi... - gi\|187771772\|gb\|EDU35616.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|189002601, gi... - gi\|189002601\|gb\|EDU71587.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|208819978, gi... - gi\|208819978\|ref\|ZP_03260298.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4042], g... gi\|209400691, gi... - gi\|209400691\|ref\|YP_002273089.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4115], ... gi\|209914339, gi... - gi\|209921080\|ref\|YP_002295164.1\| serine acetyltransferase [Escherichia coli SE11], gi\|209914339\|dbj\|... gi\|215266959, gi... - gi\|215488887\|ref\|YP_002331318.1\| serine acetyltransferase [Escherichia coli O127:H6 str. E2348/69], ... gi\|217326189, gi... - gi\|217326189\|ref\|ZP_03442273.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. TW14588], ... gi\|218550885, gi... - gi\|218550885\|ref\|YP_002384676.1\| serine acetyltransferase [Escherichia fergusonii ATCC 35469], gi\|21... gi\|218362940, gi... - gi\|218556172\|ref\|YP_002389085.1\| serine acetyltransferase [Escherichia coli IAI1], gi\|218362940\|emb\|... gi\|218367451, gi... - gi\|218560682\|ref\|YP_002393595.1\| serine acetyltransferase [Escherichia coli S88], gi\|218367451\|emb\|C... gi\|168785484, gi... - gi\|189374320\|gb\|EDU92736.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189380185, gi... - gi\|189380185\|gb\|EDU98601.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|170018160, gi... - gi\|170018160\|ref\|YP_001723114.1\| serine acetyltransferase [Escherichia coli ATCC 8739], gi\|169753088... gi\|169890950, gi... - gi\|170083115\|ref\|YP_001732435.1\| serine acetyltransferase [Escherichia coli str. K-12 substr. DH10B]... gi\|170520336, gi... - gi\|170682618\|ref\|YP_001745909.1\| serine O-acetyltransferase [Escherichia coli SMS-3-5], gi\|170520336... gi\|195935136 - gi\|195935136\|ref\|ZP_03080518.1\| serine acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|208725738, gi... - gi\|208805937\|ref\|ZP_03248274.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4206], g... gi\|208813965, gi... - gi\|208813965\|ref\|ZP_03255294.1\| serine O-acetyltransferase [Escherichia coli O157:H7 str. EC4045], g...	231.0	[0..27]	[284..4]
gi\|168464994, gi... - gi\|195632453\|gb\|EDX50937.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... gi\|205344626, gi... - gi\|205344626\|gb\|EDZ31390.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... gi\|194446045, gi... - gi\|194446045\|ref\|YP_002042949.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica ser... CYSE_SALTY - Serine acetyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cysE PE=... gi\|194459030, gi... - gi\|194472666\|ref\|ZP_03078650.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica sero... gi\|205325766, gi... - gi\|205325766\|gb\|EDZ13605.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... CYSE_SALTY - Serine acetyltransferase OS=Salmonella typhimurium GN=cysE PE=3 SV=1 gi\|167994319, gi... - gi\|205327791\|gb\|EDZ14555.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... gi\|205333226, gi... - gi\|205333226\|gb\|EDZ19990.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... gi\|205350520, gi... - gi\|205350520\|gb\|EDZ37151.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=cysE] [protein=serine acetyltransferase] [protein_id=YP_005239939.1] [location=complement(3907... gi\|62129825, gi\|... - gi\|62182192\|ref\|YP_218609.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serovar C... CYSE_SALTY - Serine acetyltransferase OS=Salmonella typhimurium GN=cysE PE=3 SV=1 gi\|197265090, gi... - gi\|197265090\|ref\|ZP_03165164.1\| serine O-acetyltransferase [Salmonella enterica subsp. enterica sero...	231.0	[0..27]	[284..4]
gi\|197364516, gi... - gi\|197364516\|ref\|YP_002144153.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serov... gi\|56415589, gi\|... - gi\|56415589\|ref\|YP_152664.1\| serine acetyltransferase [Salmonella enterica subsp. enterica serovar P...	230.0	[0..27]	[284..4]

Back

Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKERPMQTR RPFMVARTEA RQPEQLAIVD PIWGSLLNEA RSAAAQDPLL SAFLYSTILN  60
   61 HRSLEECVIY RICELLDHPD MQAVLLRQTF QDMLEDWPEW GSVLRVDIQA VYDRDPACTR 120
  121 FMEPLLYFKG FQAIQTHRLA HWLLQKGRKD LALYLQSRSS SIFQTDINPA ARIGKGIFLD 180
  181 HATGLVVGET AVIGDNVSIL HGVTLGGTGK EGADRHPKIA NGVMIGAGAK ILGNIEIGSC 240
  241 SRIAAGSVVL KPVPPKTTVA GVPARVVGEA GCSEPSRLMD QLIGADI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1t3dA
Description:	Crystal structure of Serine Acetyltransferase from E.coli at 2.2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
serine O-acetyltransferase activity	7.87896510108566	bayes_pls_golite062009
serine O-acyltransferase activity	7.87896510108566	bayes_pls_golite062009
O-acyltransferase activity	3.5929335433661	bayes_pls_golite062009
O-acetyltransferase activity	2.49457770952472	bayes_pls_golite062009
catalytic activity	2.22811944286398	bayes_pls_golite062009
transferase activity	1.82656452828944	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.61334532879528	bayes_pls_golite062009
acyltransferase activity	1.61097318205269	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.61041958820284	bayes_pls_golite062009
acetyltransferase activity	0.426204902618823	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: